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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccgctggacttctttctcatgaagttttttccgaccataagttttactttagctctacactatgtttgagagcatgatttatttgcttagtacctcagGCATTGAAGAATTTGCCACGGGAGAAAATGCAAGTGTCGACTAAGTTTGGGGTCAAATTCAACGCAGCCGGACAGGTTGTCATTGATGGCACGCCAGAGT

Basic information

species Physcomitrella patens
transcript PP1S158_112V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18355830|gb|BJ187889.1|BJ187889
EST:     CCAGCGATTTCTATGGTACGAAGCATAGCAACGAGAAGCTTCTTGGTGTG                         GCATTGAAGAATTTGCCACGGG
genomic: CCAGCGATTTCTATGGTACGAAGCATAGCAACGAGAAGCTTCTTGGTGTGgtatgtctcg ... agtacctcagGCATTGAAGAATTTGCCACGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttagctctacactatgtttgagagcatgatttatttgcttagtacctcagGCATTGAAGAATTTGCCACGGGAGAAAATGCAAGTGTCGACTAAGTTTGGGGTCAAATTCAACGCAGCCGGACAGGTTGTCATTGATGGCACGCCAGAGT
                              atgatttattt  TA-rich tract