1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtcggggtgtgatgtgtggaggggttgaacgccaagtggattgtactagcattggcattggtgttcggggtttaacgttgatgcctgtttggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCCAGGAGAGGGCAACTTTCATTTCGCACGGTAACACTGCCCGTCATGCGA
species | Physcomitrella patens |
transcript | PP1S157_50V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCEST: gi|208366965|gb|DC951452.1|DC951452
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GGTCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCEST: gi|208389551|gb|DC945803.1|DC945803
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCEST: gi|208389175|gb|DC945751.1|DC945751
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCEST: gi|162273047|gb|FC449178.1|FC449178
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCEST: gi|208370935|gb|DC944310.1|DC944310
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
EST: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATG GATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
genomic: ACATGAGACAAATCGAGAAGACAATTCAGTACTTGATTGGATCTGGGATGgtaagaagcc ... ggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTC
ctagcattggcattggtgttcggggtttaacgttgatgcctgtttggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCCAGGAGAGGGCAACTTTCATTTCGCACGGTAACACTGCCCGTCATGCGA
tttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggggtgtgatgtgtggaggggttgaacgccaagtggattgtactagcattggcattggtgttcggggtttaacgttgatgcctgtttggctctgcagGATCCCCAGACAGAGAACAATCCCTACCTGGGTTTCGTGTATACCTCGTTCCAGGAGAGGGCAACTTTCATTTCGCACGGTAACACTGCCCGTCATGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG