1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttataccttagtctgtgacccgagctctctcgcagcttttctttttgtggttctctcctcacctcaaatctctttcgatgagcttgagattggtgttcttgaacttacgttaggcttaagatccagcagcccatcggaatgacactattagttttttctaacgtgaaatcctttcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTACATGCGAGTAACAAGAAGTTCGATGATGATGTGTCGCTTGACATTATTG
species | Physcomitrella patens |
transcript | PP1S156_30V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAG GTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTAEST: gi|162224138|gb|FC399202.1|FC399202
genomic: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAGgttatacctt ... tcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
EST: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAG GTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTAEST: gi|162185949|gb|FC361049.1|FC361049
genomic: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAGgttatacctt ... tcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
EST: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAG GTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTAEST: gi|162188731|gb|FC364017.1|FC364017
genomic: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAGgttatacctt ... tcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
EST: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAG GTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTAEST: gi|162173955|gb|FC349755.1|FC349755
genomic: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAGgttatacctt ... tcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
EST: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAG GTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
genomic: CTGATATCCTTGATGCTGCTTTATTGCGACCCGGTCGCTTTGATCGTCAGgttatacctt ... tcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTA
gcccatcggaatgacactattagttttttctaacgtgaaatcctttcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTACATGCGAGTAACAAGAAGTTCGATGATGATGTGTCGCTTGACATTATTG
ttctaac putative branch site (score: 9)
tcctttctt putative PPT
tattagttttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataccttagtctgtgacccgagctctctcgcagcttttctttttgtggttctctcctcacctcaaatctctttcgatgagcttgagattggtgttcttgaacttacgttaggcttaagatccagcagcccatcggaatgacactattagttttttctaacgtgaaatcctttcttggtcagGTTACGGTGGATGTGCCTGACGTGAGAGGGAGGACCGAAATCTTGAAAGTACATGCGAGTAACAAGAAGTTCGATGATGATGTGTCGCTTGACATTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT