1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gacttgaggattatcctttacgaacccctgttgtatgcgctgatggtatttgcaacccaaatttagttcaaacttccttaatggttcatctttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAACCATCAGATTATGATCTCAGCCCTG
species | Physcomitrella patens |
transcript | PP1S150_124V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCG GTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAACEST: gi|162165557|gb|FC340668.1|FC340668
genomic: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCGgtgcgccact ... tttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAAC
EST: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCG GTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAACEST: gi|162248551|gb|FC425327.1|FC425327
genomic: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCGgtgcgccact ... tttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAAC
EST: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCG GTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAAC
genomic: AATCTGGCATTGTCATCCACTGGACGAAGGGCTTCAAAGTTGATGATGCGgtgcgccact ... tttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAAC
gtatttgcaacccaaatttagttcaaacttccttaatggttcatctttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAACCATCAGATTATGATCTCAGCCCTG
ccttaat putative branch site (score: 10)
ttcatctttct putative PPT
aaatttagttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttgaggattatcctttacgaacccctgttgtatgcgctgatggtatttgcaacccaaatttagttcaaacttccttaatggttcatctttctggcagGTGGGCAAAGACATCGTGAAGCAATTTCAGGATGCAATCAGCAGAAGTAACCATCAGATTATGATCTCAGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT