1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagaaattttagttatagtttttgctgtagcccggccagtagtttggtttcgcgactacattcggatgacgattgactgatttgtaatgggtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTAACATTGCTTTGGATGACGTGTCAATCACCAACCTTACTTTCGGGAGGG
species | Physcomitrella patens |
transcript | PP1S14_33V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCGNTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTEST: gi|100364735|gb|BY947882.1|BY947882
genomic: GTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTEST: gi|208372125|gb|DC940307.1|DC940307
genomic: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAAAGAGATCCGGANAATCTTGCANGAGCGTGCTACGAGCTTTEST: gi|208391623|gb|DC938236.1|DC938236
genomic: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGANCGTGCTACGAGCTTTEST: gi|208367370|gb|DC951288.1|DC951288
genomic: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTEST: gi|162158550|gb|FC334553.1|FC334553
genomic: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTEST: gi|208386236|gb|DC952949.1|DC952949
genomic: AGGCGGTTGTCGCTCAATACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
EST: TACAACGCCAGCCAGCTCATTACGCAGCGTGAG GTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
genomic: TACAACGCCAGCCAGCTCATTACGCAGCGTGAGgtaagatgct ... gtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTT
ggtttcgcgactacattcggatgacgattgactgatttgtaatgggtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTAACATTGCTTTGGATGACGTGTCAATCACCAACCTTACTTTCGGGAGGG
gactgat putative branch site (score: 7)
atttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaaattttagttatagtttttgctgtagcccggccagtagtttggtttcgcgactacattcggatgacgattgactgatttgtaatgggtttcgacagGTCGTCAGTAGAGAGATCCGGAGAATCTTGCAGGAGCGTGCTACGAGCTTTAACATTGCTTTGGATGACGTGTCAATCACCAACCTTACTTTCGGGAGGG
- - - - - - - - - - - tgctgta