1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgccatctcttgaattgcatatggccttacttttgggtgctctattgtcattctttttagtactttttttttccaatcatttgcaatggacgtatgtggactgggtggagtatctgaagaggctggtgtacacttcattctttcttgatatatggtgttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCAGCTAGCGTTGAAGCATCGCCAGAACAAGCATCAGCGACAGAGAATTGT
species | Physcomitrella patens |
transcript | PP1S14_318V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATG GTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCEST: gi|162235944|gb|FC411687.1|FC411687
genomic: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
EST: GATCCTCCAAGCTCTTCATG GTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCEST: gi|162159573|gb|FC335751.1|FC335751
genomic: GATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
EST: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATG GTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCEST: gi|18328677|gb|BJ160682.1|BJ160682
genomic: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
EST: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATG GTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCEST: gi|18331986|gb|BJ163998.1|BJ163998
genomic: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
EST: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATG GNTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAEST: gi|100400831|gb|BY972965.1|BY972965
genomic: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGA
EST: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATG GTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
genomic: TCTTATCACTCCAACCAACGACTTGGGAAAGATCCTCCAAGCTCTTCATGgtatgccatc ... gttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTC
atctgaagaggctggtgtacacttcattctttcttgatatatggtgttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCAGCTAGCGTTGAAGCATCGCCAGAACAAGCATCAGCGACAGAGAATTGT
tcttgat putative branch site (score: 4)
ttttact putative PPT
ttgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccatctcttgaattgcatatggccttacttttgggtgctctattgtcattctttttagtactttttttttccaatcatttgcaatggacgtatgtggactgggtggagtatctgaagaggctggtgtacacttcattctttcttgatatatggtgttttactagGTTTGGAAGTTGGGGGCGAGATGCGTATGACATCGGGAGTTCAAGTTGCTCAGCTAGCGTTGAAGCATCGCCAGAACAAGCATCAGCGACAGAGAATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC