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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaactaagttcaaatggtgagttatttgtgtaagctaagcgatggacttaaatgaaatgctcatgtttggtgcctactatctgttaaatcacttgcagGTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTGCCCCATACATTTTTAGCAACTGAAAAGTCCGACCAGCATTGGATGGTTG

Basic information

species Physcomitrella patens
transcript PP1S140_59V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162165289|gb|FC340803.1|FC340803
EST:     CTCAAGAGCACCGACTCCAATGCTTGATTCCTCCTCCTCCCAATTACAAG                         GTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTG
genomic: CTCAAGAGCACCGACTCCAATGCTTGATTCCTCCTCCTCCCAATTACAAGgtatcatttc ... tcacttgcagGTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTG
EST: gi|162150248|gb|FC326333.1|FC326333
EST:     CTCAAGAGCACCGACTCCAATGCTTGATTCCTCCTCCTCCCAATTACAAG                         GTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTG
genomic: CTCAAGAGCACCGACTCCAATGCTTGATTCCTCCTCCTCCCAATTACAAGgtatcatttc ... tcacttgcagGTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacttaaatgaaatgctcatgtttggtgcctactatctgttaaatcacttgcagGTGCCCATCAGATGGCCTAAAAGCAGAGACGAGGTCTGGCAGTCCAACGTGCCCCATACATTTTTAGCAACTGAAAAGTCCGACCAGCATTGGATGGTTG
     taaatgaaat  TA-rich tract