1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttgcgtaacacaatacacgttcttgtgaattgttgaagttgttattagagctacgaattctgccttgatgaaaaagatgattgagagacccgatgatcgtctcgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG
species | Physcomitrella patens |
transcript | PP1S13_423V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTG GTGGTTACGGCACTTTGGAAGAEST: gi|208354753|gb|DC918723.1|DC918723
genomic: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGA
EST: AAG-AANGNTGAGATGG-TNGTCAAG-GGATGC-TTCA-TGCG-TTCCTG G-NGNTACGGCAC-TTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCEST: gi|208358562|gb|DC946523.1|DC946523
genomic: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGC
EST: AGCGGATGCTTTCATTGCG-TTNCTG G-GGNTACGGCAC-TTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCEST: gi|208360660|gb|DC930471.1|DC930471
genomic: AGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGC
EST: AAGAAAGGCTGAAATGGCTCGTCAAGCGNATGCTTTCATTGCGCTTCCTG GTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAAEST: gi|208400182|gb|DC904830.1|DC904830
genomic: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAA
EST: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTG GTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCEST: gi|67694217|gb|BJ954450.1|BJ954450
genomic: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGC
EST: NAGAAAGGCTGAGATGGCTCGTCAAGCGGATGC-TTCATTGCGCTTCCTG GTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGC
genomic: AAGAAAGGCTGAGATGGCTCGTCAAGCGGATGCTTTCATTGCGCTTCCTGgtattttgcg ... cgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGC
ttctgccttgatgaaaaagatgattgagagacccgatgatcgtctcgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG
ccttgat putative branch site (score: 2)
tcgtctc putative PPT
atgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgcgtaacacaatacacgttcttgtgaattgttgaagttgttattagagctacgaattctgccttgatgaaaaagatgattgagagacccgatgatcgtctcgatttgcagGTGGTTACGGCACTTTGGAAGAACTTGTGGAGGTCATAACCTGGAATCAGCTCGGCATTCACAAAAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC