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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtgaatctatgcctttttcattaatgatcccatttggcatcaaacacattttatcaatgtggacatcgacaactgtcggaagttctgcgcatccctggtttgggttgttgaagaaaagattagagacttgaagttctgaatttaattttgatttcgttgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCTGTGAAGCATGGTAGGCCCGGTATCGGAGCTACCCACTCCTCCCGATTTA

Basic information

species Physcomitrella patens
transcript PP1S13_413V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S13_413V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ26636 (Selaginella moellendorffii), 3'ss of exon 3
gtatagtgaatctatgcctttttcattaatgatcccatttggcatcaaacacattttatcaatgtggacatcgacaactgtcggaagttctgcgcatccctggtttgggttgttgaagaaaagattagagacttgaagttctgaatttaattttgatttcgttgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCTGTGAAGCATGGTAGGCCCGGTATCGGAGCTACCCACTCCTCCCGATTTA
                                                                                                    ||     |  | |||       | ||       |   ||||| || ||   | |    || | ||   |||||| |||||||| ||||||||| ||| |||||| ||||| ||||||||||| || ||||| ||  | ||||||||||| || || ||||| ||| | ||||
---------------------------------------------------------------------------------------------------gtgagcgagcgtcttgtctgcgtgctt------ctcgtgttctaaactt--ctctcgcctc-tggtgacgcagCCCGAGATGATCGGACACTACCTGGGAGAGTTCTCCATCTCGTACAAGCCAGTCAAGCACGGGCGTCCCGGTATCGGTGCCACACACTCGTCCAGGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15727515|gb|BI740330.1|BI740330
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67720135|gb|BJ970394.1|BJ970394
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67726550|gb|BJ976809.1|BJ976809
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67573461|gb|BJ946285.1|BJ946285
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18367386|gb|BJ199469.1|BJ199469
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162246076|gb|FC423564.1|FC423564
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162256576|gb|FC432886.1|FC432886
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162236134|gb|FC411123.1|FC411123
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162219898|gb|FC396713.1|FC396713
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18369431|gb|BJ201518.1|BJ201518
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|19779101|gb|BQ039403.1|BQ039403
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|37843047|gb|BJ601055.1|BJ601055
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67578289|gb|BJ950456.1|BJ950456
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162253862|gb|FC430158.1|FC430158
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67725981|gb|BJ976240.1|BJ976240
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162261836|gb|FC438360.1|FC438360
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|19787458|gb|BQ040628.1|BQ040628
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67721648|gb|BJ971907.1|BJ971907
EST:     GCGTCATTGGTG-TTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162254398|gb|FC430533.1|FC430533
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|19789804|gb|BQ041523.1|BQ041523
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18329053|gb|BJ161059.1|BJ161059
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|15728290|gb|BI740713.1|BI740713
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67719739|gb|BJ969998.1|BJ969998
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|7067117|gb|AW496972.1|AW496972
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|19789860|gb|BQ041556.1|BQ041556
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67717464|gb|BJ967723.1|BJ967723
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|37849193|gb|BJ607201.1|BJ607201
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|37847868|gb|BJ605876.1|BJ605876
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67728006|gb|BJ978265.1|BJ978265
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67696842|gb|BJ957075.1|BJ957075
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162267342|gb|FC442130.1|FC442130
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|6167149|gb|AW145413.1|AW145413
EST:     GTCATTTGGTGTTTACAATGGCAAGACCTTTA-CCAGGTGGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGT
genomic: GTCATT-GGTGTTTACAATGGCAAGACCTTTAACCAGGTGG-AGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGT
EST: gi|162219899|gb|FC396714.1|FC396714
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|15262080|gb|BI437390.1|BI437390
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67698541|gb|BJ958774.1|BJ958774
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67718053|gb|BJ968312.1|BJ968312
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18375139|gb|BJ206717.1|BJ206717
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67720845|gb|BJ971104.1|BJ971104
EST:     AGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACNTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: AGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|208398737|gb|DC916260.1|DC916260
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18325325|gb|BJ157321.1|BJ157321
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162205496|gb|FC381594.1|FC381594
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|37851084|gb|BJ609092.1|BJ609092
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67704710|gb|BJ964943.1|BJ964943
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|208356889|gb|DC902385.1|DC902385
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162256575|gb|FC432885.1|FC432885
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67701164|gb|BJ961397.1|BJ961397
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18337255|gb|BJ169279.1|BJ169279
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67724054|gb|BJ974313.1|BJ974313
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162254399|gb|FC430534.1|FC430534
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67575089|gb|BJ947913.1|BJ947913
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGNCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|18340501|gb|BJ172529.1|BJ172529
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|162275442|gb|FC451821.1|FC451821
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
EST: gi|67709976|gb|BJ965792.1|BJ965792
EST:     GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAG                         CCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT
genomic: GCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 19

TGTGAGGACTCACCTCCGCAACATGATCATCGTTCCTGAGATGATTGGCAGCGTCATTGGTGTTTACAATGGCAAGACCTTTAACCAGGTGGAGATCAAGgtatagtgaa ... tgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCTGTGAAGCATGGTAGGCCCGGTATCGGAGCTACCCACTCCTCCCGATTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaagattagagacttgaagttctgaatttaattttgatttcgttgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCTGTGAAGCATGGTAGGCCCGGTATCGGAGCTACCCACTCCTCCCGATTTA
                                 ttttgat  putative branch site (score: 19)
                                       tttcgtt  CT-rich tract
                     ttctgaatttaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatagtgaatctatgcctttttcattaatgatcccatttggcatcaaacacattttatcaatgtggacatcgacaactgtcggaagttctgcgcatccctggtttgggttgttgaagaaaagattagagacttgaagttctgaatttaattttgatttcgttgttttgcagCCTGAGATGATTGGACACTACTTGGCAGAGTTTTCCATATCGTACAAGCCTGTGAAGCATGGTAGGCCCGGTATCGGAGCTACCCACTCCTCCCGATTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC