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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccctggtgtatgcaattaatgactcgtatattgtattcggttatagctgttcccttgtgtattttcatcaataatggaacggaggtgataatttttcagGTGGCAAAGAGATTCAATTTAGCCAAGTCGTTATGGAGGTGATGCGACAGATCGAAGGGGCCTATGCTCTTATTTTCAAAAGCCCTCACTATCCAAATGA

Basic information

species Physcomitrella patens
transcript PP1S139_11V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S139_11V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G005849_T02 (Zea mays), 3'ss of exon 3
tccctggtgtatgcaattaatgactcgtatattgtattcggttatagctgttcccttgtgtattttcatcaataatggaacggaggtgataatttttcagGTGGCAAAGAGATTCAA--TTTAGCCAAGTCGTTATGGAGGTGATGCGACAGATCGAAGGGGCCTATGCTCTTATTTTCAAAAGCCCTCACTATCCAAATGA------
      |  || |  ||||  |  |   | |   || |   || |  |||  ||| |    | ||  ||  ||    |  |       || ||||||||  |    | | |||   |  ||||||||||| |||||||| || ||| | ||| | ||||| ||||| || ||||| || |||||||| |||||||| |||||      
---gcagaata-gtcattatcgcattacaaa--ataattcattctgactgaacccattatgacttctatttatggcagtcccttac--attatttttcacttcctcagGTGATGTGACGTTTAGCCAAGTTGTTATGGAAGTCATGAGGCAGCTTGAAGGAGCCTACGCACTTATCTTTAAAAGCCCGCACTATCCCAATGAATTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgttcccttgtgtattttcatcaataatggaacggaggtgataatttttcagGTGGCAAAGAGATTCAATTTAGCCAAGTCGTTATGGAGGTGATGCGACAGATCGAAGGGGCCTATGCTCTTATTTTCAAAAGCCCTCACTATCCAAATGA
                                               tttttc  CT-rich tract
               tattttcatcaataat  TA-rich tract