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gtaagtacttattatatttaccctacacttcaaattagaattcgttgcgtgtctgagtaagcttcaagtgtgcggattctaacaatgctattttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAACTATTCACAGGCAGGGTGCTGCAGTATGGGGTGGCGAGAAGTCCTTCA
species | Physcomitrella patens |
transcript | PP1S138_36V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAEST: gi|162213005|gb|FC389221.1|FC389221
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAEST: gi|162170163|gb|FC347283.1|FC347283
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAEST: gi|162154476|gb|FC330478.1|FC330478
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAEST: gi|162262409|gb|FC439673.1|FC439673
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAEST: gi|162230691|gb|FC406114.1|FC406114
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
EST: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACC TTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
genomic: ACTGGAACAATGCAAGTCAGGGGAAGCCTGACCCAGTGTATCACCGCACCgtaagtactt ... ttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCA
cgtgtctgagtaagcttcaagtgtgcggattctaacaatgctattttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAACTATTCACAGGCAGGGTGCTGCAGTATGGGGTGGCGAGAAGTCCTTCA
ttctaac putative branch site (score: 5)
ctatttt putative PPT
tatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttattatatttaccctacacttcaaattagaattcgttgcgtgtctgagtaagcttcaagtgtgcggattctaacaatgctattttggggccagTTCTGGACAGAGAGCTTTGTGCAATGGTCACCTTTGGGAACCTATCTGGCAACTATTCACAGGCAGGGTGCTGCAGTATGGGGTGGCGAGAAGTCCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT