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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG

Basic information

species Physcomitrella patens
transcript PP1S136_175V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 3
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
                                                                           | ||   | |   ||  | | | |   |    || ||     | || |   |  | ||||| |||||||| || || |||||||||||||||   || |||||||||||||||
---------------------------------------------------------------------------gtttgatttt---tctttcttttttggccttggtgctcagAGTTCTCTACTTCGTCAGGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 3
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
                                                                           | ||   | |   ||  | | | |   |    || ||     | || |   || | ||||| |||||||| || || |||||||||||||||   || |||||||||||||||
---------------------------------------------------------------------------gtttgatttt---tctttcttttttggccttggtgctaagagttctctactttgtcagGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ31296 (Selaginella moellendorffii), 3'ss of exon 3
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
                                                                           | ||   | |   ||  | | | |   |    || ||     | || |   |  | ||||| |||||||| || || |||||||||||||||   || |||||||||||||||
---------------------------------------------------------------------------gtttgatttt---tctttcttttttggccttggtgctaagagttctctacttcgtcagGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 3
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
                                                                           | ||   | |   ||  | | | |   |    || ||     | || |   |  | ||||| |||||||| || || |||||||||||||||   || |||||||||||||||
---------------------------------------------------------------------------gtttgatttt---tctttcttttttggccttggtgctaagacttctctacttcgtcagGGCCTGCTATGGTGTTCTCAGGTTCATCATGGAGTCTGGAGCCAAGGGTTGTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18341601|gb|BJ173636.1|BJ173636
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18342317|gb|BJ174352.1|BJ174352
EST:     AGGCTGAGTCTCTTCGATACAAGCTTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
genomic: AGGCTGAGTCTCTTCGATACAAGCTT-CTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGA-GTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
EST: gi|18348091|gb|BJ180138.1|BJ180138
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAG
EST: gi|162238741|gb|FC419052.1|FC419052
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|100353473|gb|BY964824.1|BY964824
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18328942|gb|BJ160948.1|BJ160948
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162265655|gb|FC441618.1|FC441618
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37823786|gb|BJ581852.1|BJ581852
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162258820|gb|FC434827.1|FC434827
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18328002|gb|BJ160006.1|BJ160006
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162267778|gb|FC443768.1|FC443768
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162258819|gb|FC434826.1|FC434826
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37824033|gb|BJ582099.1|BJ582099
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18341560|gb|BJ173595.1|BJ173595
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37830179|gb|BJ588191.1|BJ588191
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18344831|gb|BJ176872.1|BJ176872
EST:     AGGCTGAGTCTCTTCGATACAAGCCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: AGGCTGAGTCTCTTCGATACAAGC-TTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162280359|gb|FC456064.1|FC456064
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162265654|gb|FC441617.1|FC441617
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18332204|gb|BJ164217.1|BJ164217
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37821437|gb|BJ579503.1|BJ579503
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|22132029|gb|BQ826942.1|BQ826942
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18332244|gb|BJ164257.1|BJ164257
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18344586|gb|BJ176627.1|BJ176627
EST:     AGGCTGAGTCTCTTCGATACAAGCCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
genomic: AGGCTGAGTCTCTTCGATACAAGC-TTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGA-GTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTT
EST: gi|67719851|gb|BJ970110.1|BJ970110
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162280358|gb|FC456063.1|FC456063
EST:     CAGGCTGAGTCTTTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|37827462|gb|BJ585474.1|BJ585474
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18337153|gb|BJ169177.1|BJ169177
EST:     CAGGNTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|100444204|gb|BY964102.1|BY964102
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCNAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|18336232|gb|BJ168254.1|BJ168254
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|208375019|gb|DC956415.1|DC956415
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|67728112|gb|BJ978371.1|BJ978371
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|162238740|gb|FC419051.1|FC419051
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
EST: gi|208386351|gb|DC932847.1|DC932847
EST:     CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAG                         GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG
genomic: CAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 22

TGGAGTTGTACGCTGAGAAGGTTAACAACAGAGGTCTATGCGCTATTGCGCAGGCTGAGTCTCTTCGATACAAGCTTCTTGGTGGTCTTGCCGTTCGCAGgtccgtactt ... gtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG
                      aactgac  putative branch site (score: 22)
                                              tattttt  putative PPT
                                            tgtattttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtccgtacttgcggttgaatgtgtatcgtggaatgacagaattgtgggtgtatgttatttccccatctattataagcttaggtgtaggtcaatttgtctcaactgacgtactttctatcctgtgtatttttagGGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA