Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcccatgtggattctctgggtgtcattgattctgactttgcacatgccgcagatgatgaaaggaaatgcaagaagctattagtgtccatcgagcagggaggcatttgtggttcctagtccatggctgggagggtcacatgagttagtggcgtgatggaactgacattgatgataattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCCGGAAAACACATCCAGGCCGGAGCCAAGAAGGTGTTGATC

Basic information

species Physcomitrella patens
transcript PP1S135_29V6.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S135_29V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv14s0068g00680.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtgcccatgtggattctctgggtgtcattgattctgactttgcacatgccgcagatgatgaaaggaaatgcaagaagctattagtgtccatcgagcagggaggcatttgtggttcctagtccatggctgggagggtcacatgagttagtggcgtgatggaactgacattgatgataattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCCGGAAAACACATCCAGGCCGGAGCCAAGAAGGTGTTGATC
                                                                             | | ||| || |   || | | || |      ||| ||| ||  |     |   | | |   ||||||          | | ||||   || | ||  | | |     ||||||| |||||||||| || ||||| || || || || ||||||||||||   |  ||||| || || ||||||||||| || |||||||||||| | |||
-----------------------------------------------------------------------------gtaactaatactaatcacccatcaagt-----tttttggatcgaatggactaattagcat--tcacatt---------cataatggtgatggcttttgttacatggtccagGGACTTGGACATTGATCTAGTGATAGAAGGGACAGGGGTGTTTGTGGACAGAGATGGTGCAGGCAAGCACATCCAGGCAGGGGCCAAGAAGGTGCTCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162271|gb|FC338053.1|FC338053
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100447177|gb|CJ971476.1|CJ971476
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100445756|gb|CJ970055.1|CJ970055
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100390360|gb|BY952768.1|BY952768
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162247148|gb|FC423024.1|FC423024
EST:     AAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100391109|gb|BY953119.1|BY953119
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162252167|gb|FC425845.1|FC425845
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100356872|gb|BY965321.1|BY965321
EST:     AAGGTTATCAAGGTGGTGTCCGACAGAAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGAATTGAGG-AACCGGAGTGTTTGTGGACG
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGA-TTGAGGGAACCGGAGTGTTTGTGGACG
EST: gi|100376420|gb|BY986158.1|BY986158
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGTGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACCA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162250265|gb|FC425919.1|FC425919
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162265993|gb|FC442684.1|FC442684
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100443635|gb|BY963732.1|BY963732
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100355307|gb|BY965096.1|BY965096
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGAGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100447310|gb|CJ971609.1|CJ971609
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100413327|gb|BY956617.1|BY956617
EST:     AAGGTTATCAAAGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGAAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208400254|gb|DC908915.1|DC908915
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100448385|gb|CJ972684.1|CJ972684
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100443711|gb|BY963808.1|BY963808
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAAACTGCCCTGGGG                         GGAACATGGACATTGACCTCGTGATT
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGA-CATGGACATTGACCTCGTGATT
EST: gi|208393257|gb|DC942425.1|DC942425
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100354988|gb|BY964942.1|BY964942
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100430110|gb|BY978252.1|BY978252
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162185945|gb|FC361045.1|FC361045
EST:     CAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: CAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208399830|gb|DC904702.1|DC904702
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162199488|gb|FC374089.1|FC374089
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100436669|gb|BY979466.1|BY979466
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162170257|gb|FC347377.1|FC347377
EST:     GACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: GACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100424423|gb|BY958477.1|BY958477
EST:     AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCCTGGGG                         G-ACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACG
genomic: AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCC-TGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACG
EST: gi|100388562|gb|BY952164.1|BY952164
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100410119|gb|BY974420.1|BY974420
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAAACCACTCAACCTGCCCTGGGG                         GGACATGGACTTTGACCTCGTGAATTGAGGAAACCGGAGTGTTTGTGGGAC
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGA-TTGAGGGAACCGGAGTGTTTGTGG-AC
EST: gi|100446725|gb|CJ971024.1|CJ971024
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100428077|gb|BY959271.1|BY959271
EST:     AGGTTATCAAGGTGGTGTCCGACAGGAAACCACTCAACCTGCCCCTGGGG                         G-ACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACA
genomic: AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCC-TGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACG
EST: gi|100384962|gb|BY969697.1|BY969697
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100437565|gb|BY979716.1|BY979716
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100438868|gb|BY961844.1|BY961844
EST:     AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCCTGGGG                         G-ACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACG
genomic: AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCC-TGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACG
EST: gi|100359836|gb|BY947146.1|BY947146
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162155095|gb|FC330889.1|FC330889
EST:     TTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: TTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100356849|gb|BY965310.1|BY965310
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100412429|gb|BY974729.1|BY974729
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100443614|gb|BY963711.1|BY963711
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|18361914|gb|BJ193981.1|BJ193981
EST:     AGGTTATCAAGGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTG
genomic: AGGTTATCAAGG-TGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTG
EST: gi|162205171|gb|FC381269.1|FC381269
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100393240|gb|BY989791.1|BY989791
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCTCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGATTGTTTGTGGACTA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100358917|gb|BY946753.1|BY946753
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162177605|gb|FC353191.1|FC353191
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162150957|gb|FC327853.1|FC327853
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162230022|gb|FC405962.1|FC405962
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162185629|gb|FC361522.1|FC361522
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162256440|gb|FC432471.1|FC432471
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100389987|gb|BY989067.1|BY989067
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100372544|gb|BY985650.1|BY985650
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162192423|gb|FC369105.1|FC369105
EST:     GTCCGACAGGAACCCACTTAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: GTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100425409|gb|BY958580.1|BY958580
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100377629|gb|BY986333.1|BY986333
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162163118|gb|FC340172.1|FC340172
EST:     TGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: TGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162161224|gb|FC337287.1|FC337287
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100370184|gb|BY985284.1|BY985284
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100422878|gb|BY958044.1|BY958044
EST:     AGGTTATCAAGGTGGTGTCCGACAGGAACCCACTNCA-CCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AGGTTATCAAGGTGGTGTCCGACAGGAACCCACT-CAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|162179202|gb|FC355667.1|FC355667
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|100361976|gb|BY947721.1|BY947721
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA
EST: gi|208384289|gb|DC903356.1|DC903356
EST:     AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGG                         GGACATGGACATTGACCTCGTGATTGANGGAACCGGAGTGTTTGTGGACGA
genomic: AAGGTTATCAAGGTGGTGTCCGACAGGAACCCACTCAACCTGCCCTGGGGgtaagtgccc ... taattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagggtcacatgagttagtggcgtgatggaactgacattgatgataattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCCGGAAAACACATCCAGGCCGGAGCCAAGAAGGTGTTGATC
                                         atgataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgcccatgtggattctctgggtgtcattgattctgactttgcacatgccgcagatgatgaaaggaaatgcaagaagctattagtgtccatcgagcagggaggcatttgtggttcctagtccatggctgggagggtcacatgagttagtggcgtgatggaactgacattgatgataattggcagGGACATGGACATTGACCTCGTGATTGAGGGAACCGGAGTGTTTGTGGACGAGGCCGGTGCCGGAAAACACATCCAGGCCGGAGCCAAGAAGGTGTTGATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG