1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagcaataatcgtaatgttaccaattccccaatccatctagcgcttacctgcctcctattaactaactgggtatttattttgggtggggatggatcacagTGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGCCCCATTTGTCGGACCCCAGTGGAGCGCCTGTTGGAAATCAAAGTGCCCA
species | Physcomitrella patens |
transcript | PP1S131_9V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTCGACACATG TGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGCEST: gi|162169160|gb|FC345127.1|FC345127
genomic: TTGTCGACACATGgtgagaccac ... tggatcacagTGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGC
EST: TCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATG TGTATGTGCAGTGAATGCGCCAAGG
genomic: TCTGTATGTCCGAACCTCGGGATACAACTGTCCTGCCTTGTCGACACATGgtgagaccac ... tggatcacagTGTATGTGCAGTGAATGCGCCAAGG
tacctgcctcctattaactaactgggtatttattttgggtggggatggatcacagTGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGCCCCATTTGTCGGACCCCAGTGGAGCGCCTGTTGGAAATCAAAGTGCCCA
aactaac putative branch site (score: 1)
tatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaataatcgtaatgttaccaattccccaatccatctagcgcttacctgcctcctattaactaactgggtatttattttgggtggggatggatcacagTGTATGTGCAGTGAATGCGCCAAGGTGTTAAGGTTTCAAACCAATCGCTGCCCCATTTGTCGGACCCCAGTGGAGCGCCTGTTGGAAATCAAAGTGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG