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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatttgaattgcttttaacgtcattattgttgtaaggcaattgcttccactttatctaatgtttggttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCGCAACATGCGCCCGGAAACTTTTGCCAGTCTTGTTTCGGCAATTCTTTAC

Basic information

species Physcomitrella patens
transcript PP1S130_217V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162247133|gb|FC421358.1|FC421358
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|100359970|gb|BY965963.1|BY965963
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|18341730|gb|BJ173765.1|BJ173765
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|67576219|gb|BJ949043.1|BJ949043
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCA
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCA
EST: gi|162206027|gb|FC382812.1|FC382812
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|67699719|gb|BJ959952.1|BJ959952
EST:     TCGCCACGGATGTGCAAANCAT                         GCACCAACGTTTGCAATTTCCGTCATAAATTGTACCAACTGCGAGAAGAGC
genomic: TCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTT-CGTCATAAATTGTACCAACTGCGAGAAGAGC
EST: gi|162213862|gb|FC389853.1|FC389853
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|162243636|gb|FC421809.1|FC421809
EST:     AACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGC
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACC-AACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGC
EST: gi|37830057|gb|BJ588069.1|BJ588069
EST:     CTCTGGACTCGCCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: CTCTGGACTCG-CCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|37821367|gb|BJ579433.1|BJ579433
EST:     TCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: TCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|162206028|gb|FC382813.1|FC382813
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|162213861|gb|FC389852.1|FC389852
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|162247132|gb|FC421357.1|FC421357
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|18332387|gb|BJ164400.1|BJ164400
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|18350731|gb|BJ182782.1|BJ182782
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
EST: gi|162220663|gb|FC396875.1|FC396875
EST:     GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCAT                         GCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG
genomic: GACAAGCTTTACATTGGCCTCTCTGGACTCGCCACGGATGTGCAAACCATgtaagaattt ... ttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattattgttgtaaggcaattgcttccactttatctaatgtttggttcttcgcagGCACCAACGTTTGCAATTTCGTCATAAATTGTACCAACTGCGAGAAGAGCGCAACATGCGCCCGGAAACTTTTGCCAGTCTTGTTTCGGCAATTCTTTAC
                                atctaat  putative branch site (score: 3)
                                             ttcttcgc  putative PPT
                             tttatctaatgttt  TA-rich tract