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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttctcatactcatattttggtcgtcaccatctttttcctccttttgatgatgccgccgaagctatttgagattgtgcgtctgttagtattgtaagactactgagcaagtgatgatcatatgtcagGATACGAAGTTAGTCTACAAGCATTTTGCCACCCTCTACTTTGTGTTTGTCATAGACAGTGCCGAAAGCGAGCTGGGAATCCTCGACCTAATTCAAG

Basic information

species Physcomitrella patens
transcript PP1S128_112V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S128_112V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ36156 (Selaginella moellendorffii), 3'ss of exon 3
gtgagtttttctcatactcatattttggtcgtcaccatctttttcctccttttgatgatgccgccgaagctatttgagattgtgcgtctgttagtattgtaagactactgagcaagtgatgatcatatgtcagGATACGAAGTTAGTCTACAAGCATTTTGCCACCCTCTACTTTGTGTTTGTCATAGACAGTGCCGAAAGCGAGCTGGGAATCCTCGACCTAATTCAAG
                                                                    |   ||| |  |    | ||  ||| | |  |     |   | |  ||  | |||| |  | ||||  |||||| |||| ||||||||||| || || ||||| || |||||||| || || ||||  || |||||||||||||| ||||| || || ||||
------------------------------------------------------------------gtgagttttcatttctctcctcctttattttctt----ttgaagggagagctaagatcttg-gacagGGGACGAAGCTAGTTTACAAGCATTTCGCGACGCTCTATTTCGTGTTTGTGATCGATAGTGGAGAGAGCGAGCTGGGAATTCTCGATCTTATACAAG

upper sequence: PP1S128_112V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ18661 (Selaginella moellendorffii), 3'ss of exon 3
gtgagtttttctcatactcatattttggtcgtcaccatctttttcctccttttgatgatgccgccgaagctatttgagattgtgcgtctgttagtattgtaagactactgagcaagtgatgatcatatgtcagGATACGAAGTTAGTCTACAAGCATTTTGCCACCCTCTACTTTGTGTTTGTCATAGACAGTGCCGAAAGCGAGCTGGGAATCCTCGACCTAATTCAAG
                                                                 | |  | ||| |  |    | ||  ||| | |  |     |   | |  ||  | |||| |  | |||   |||||| |||| ||||||||||| || || ||||| || |||||||| || || ||||  || |||||||||||||| ||||| || || ||||
-----------------------------------------------------------------gtaagt-tttcatttctctcctcctttattttctt----ttgaagggagagctaagatcttg-gacagAGGACGAAGCTAGTTTACAAGCATTTCGCGACGCTCTATTTCGTGTTTGTGATCGATAGTGGAGAGAGCGAGCTGGGAATTCTCGATCTTATACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgcgtctgttagtattgtaagactactgagcaagtgatgatcatatgtcagGATACGAAGTTAGTCTACAAGCATTTTGCCACCCTCTACTTTGTGTTTGTCATAGACAGTGCCGAAAGCGAGCTGGGAATCCTCGACCTAATTCAAG
            ttagtatt  TA-rich tract