1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactgctgtacatgtccgcacaagacagtttcatgttttagaagttttctcctactttttagatcgcagtatgcatgtacttgctgattttgtttcattcctgcgtttcaaagtagctgactacagtaattatctctgacgcccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCTCGACACACTTGGAGGCAATGCGCATTGCCAAAGAGGCAGGCGCACTCC
species | Physcomitrella patens |
transcript | PP1S127_105V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCEST: gi|6102356|gb|AW126826.1|AW126826
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCEST: gi|100381192|gb|BY950021.1|BY950021
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCEST: gi|162163345|gb|FC339671.1|FC339671
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCEST: gi|162263646|gb|FC438882.1|FC438882
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCEST: gi|162280371|gb|FC456076.1|FC456076
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCEST: gi|100416897|gb|BY993143.1|BY993143
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
EST: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAG GCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
genomic: CCGACATGCTCTTCCAGCCAGATGAGCTGGATATTGAGTTGTTGCAGCAGgtactgctgt ... ccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGC
ttcctgcgtttcaaagtagctgactacagtaattatctctgacgcccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCTCGACACACTTGGAGGCAATGCGCATTGCCAAAGAGGCAGGCGCACTCC
ctctgac putative branch site (score: 10)
agtaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgctgtacatgtccgcacaagacagtttcatgttttagaagttttctcctactttttagatcgcagtatgcatgtacttgctgattttgtttcattcctgcgtttcaaagtagctgactacagtaattatctctgacgcccatcgtcagGCGTCTATCTTCCACTATGGATCCATCAGTTTGATCACGGAGCCATCTCGCTCGACACACTTGGAGGCAATGCGCATTGCCAAAGAGGCAGGCGCACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG