1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaattccctttctctaaacacacccttccatattgattccccctttaccaaactctaatcttgtgaattttacaaatcagtgcctgtcgaatcggttctttgagactcaactctctgcaactctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCGAGGTGGATCAGGACAAGGTTTTCGGCTTGACCATCAATCCGAGCTATC
species | Physcomitrella patens |
transcript | PP1S123_99V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|67697862|gb|BJ958095.1|BJ958095
genomic: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|208355342|gb|DC949836.1|DC949836
genomic: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: CAGCAAAACGNCTCTCTCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|162180587|gb|FC356944.1|FC356944
genomic: CAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|37851332|gb|BJ609340.1|BJ609340
genomic: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: CCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|37842891|gb|BJ600899.1|BJ600899
genomic: CCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: CACCAGCAAAACGCCTCTNTCCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCEST: gi|208361876|gb|DC953926.1|DC953926
genomic: CACCAGCAAAACGCCTCTCT-CCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
EST: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAA GTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
genomic: GCACCAGCAAAACGCCTCTCTCCACATACATGGCGCAAAAGGGTTACAAAgtgaattccc ... ctctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattccctttctctaaacacacccttccatattgattccccctttaccaaactctaatcttgtgaattttacaaatcagtgcctgtcgaatcggttctttgagactcaactctctgcaactctgtacagGTCGCGAATGTGCCTCTGGTGCTGGGCATCGATCCGCCCAAGGAACTCTTCGAGGTGGATCAGGACAAGGTTTTCGGCTTGACCATCAATCCGAGCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA