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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaagattgtaaatgtaaaggtggttactgttgggttaggataggaaagcaaaaaaagatcaaaaaaaattctaccaattcatcagttctctgctgttacgattcctggtctgctgcggtgaactggaactgagtgtcagggagtccgagtaatatctttacaactttgtcccagATGACTAAACTTGCAATCATTCCATGCACAGTGTTACTGGAAACAGTTTTCTTCAGGAAACGCTTCAG

Basic information

species Physcomitrella patens
transcript PP1S123_22V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195419|gb|FC369835.1|FC369835
EST:     TCGGCTTACTAAATTTGAGCTTAGGTTTCAACTCTGTTGGATTTTATCAG                         ATGACTAAACTTGCAATCATTCCATGCACAGTGTTACTGGAAACAGTTTTC
genomic: TCGGCTTACTAAATTTGAGCTTAGGTTTCAACTCTGTTGGATTTTATCAGgtatgttgaa ... tttgtcccagATGACTAAACTTGCAATCATTCCATGCACAGTGTTACTGGAAACAGTTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactggaactgagtgtcagggagtccgagtaatatctttacaactttgtcccagATGACTAAACTTGCAATCATTCCATGCACAGTGTTACTGGAAACAGTTTTCTTCAGGAAACGCTTCAG
                                            ctttgtccc  CT-rich tract
                              taatatctttacaa  TA-rich tract