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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC

Basic information

species Physcomitrella patens
transcript PP1S122_100V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA19G30550.1 (Glycine max), 3'ss of exon 3
----gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
    ||  ||  |  ||  ||||   ||  |        |  | ||||   || |   ||  ||  | ||     |||  |  || |||    |  |   | ||||  ||||||||||||| || || ||||| |||||||| ||| |||||||  |  |||| || ||||| || || |||||||| || ||||||||||| |
gttagcatttgactcatctttttcgcttttcaccaccctttttcatttgtcagatctatt--ttgctttggtaaaaattgaaactttggactttgtttgtttagATCCTGTTCGTAATCTCAAAACCAGACGTTTTCAAGAGTCCAACATCTGACACGTACATTATATTTGGGGAAGCCAAGATTGAAGACTTGAGCTCACAGC

upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G12390.1 (Arabidopsis thaliana), 3'ss of exon 3
----gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttag-tttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
    | | ||   |  |  | ||   |    ||| | |    | |||   |  | ||  ||   ||||    || |  ||    |  | |||  |     | ||||| ||||| || || || |||||||| ||||||||||| |||||||| ||  |  |  | |||||||||||||||||||| |||||||||||||| ||  
gtttgtgttttctctttaatattcagtcaatcttaatttcttttattcacacatcaggctttaatattg-atctgttttggggacatttgct-ttggaaca-cagATCTTGTTTGTCATATCAAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATCTTTGGAGAGGCGAAGATCGAGGATTTGAGCTCTCAGA

upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv08s0040g00600.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------gcgattctccaattgttttattttcccc-ttg--aatctggtgatttcgaagttagtttcgttattctgcctct--aatgta---tgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
                            | | |  | || |  | ||   ||  |||  |      | || ||    ||  ||   || | |   || |  || | |   | || ||| |  || | | ||||||| | || || ||||||||||| || ||||||||||||||| | || ||  || |  | || ||||| ||||| ||||||||||||||||| |||||||
gtcagtttctctttgcccactgttgattactttttatttttcatgttgggcctattgtcacctctttaatatcaggtttctttctattttacaatctattgaaagcagtttactatggtttttattat-tcagATTCTCTTTGTCATCTCGAAGCCAGATGTGTTCAAGAGCCCAACTTCAGACACTTATGTAATATTTGGCGAGGCAAAGATTGAGGATTTGAGTTCACAAC

upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv16s0098g00830.t01 (Vitis vinifera), 3'ss of exon 3
gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
                |  | |||   ||    |||| |  | |      | || || | | | | | |     || |   ||||  |||    |  ||||| || ||  | ||||| |||||||| || |||||||| |||   || ||  |  |  |||| ||||| ||||||||||| |||||||||||||| || |
---------------gtaaaattttgtctgatttctgttcttgtattcacttgtatcatgaatgttctttaccagtttttcctgg--gct----tggcagATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGC

upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ23805 (Selaginella moellendorffii), 3'ss of exon 3
gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgct---ctggctgctaatgtat--cagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
                                              ||| | |  | | ||    |     |||  |  ||    | ||| ||  |   |  |||||  |||| || ||||| ||||| ||||||||||||||||| ||||| ||  |||||||||||||||| ||||| ||||| ||||| ||||| || || |
--------------------------------------------gtaagcttgcgttggtagatcgaagagaatagagactaacttcgcttctggttctttccagATACTGTTTGTGATCTCCAAGCCCGACGTGTTCAAGAGCCCGGCATCCGACACTCACATCATCTTTGGCGAGGCCAAGATCGAGGACTTGAGTTCCCAGC

upper sequence: PP1S122_100V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ21445 (Selaginella moellendorffii), 3'ss of exon 1
gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
                                       | || || |||   |           |  |||||  |  ||||    | ||    |  |||||  ||||||| ||||| ||||| ||||||||||||||||| ||||| ||  |||||||||||||||| ||||| ||||| ||||| ||||| || || |
-----------------------------------gtaagcttgcgtagtagatgaaagagaatagagtctaac-ttcgctccttgttct----ttccagATACTGTTCGTGATCTCCAAGCCCGACGTGTTCAAGAGCCCGGCATCCGACACTCACATCATCTTTGGCGAGGCCAAGATCGAGGACTTGAGTTCCCAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18374209|gb|BJ205787.1|BJ205787
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|15262192|gb|BI437502.1|BI437502
EST:     AAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: AAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|208372205|gb|DC948008.1|DC948008
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67571025|gb|BJ943849.1|BJ943849
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162231154|gb|FC406460.1|FC406460
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162178580|gb|FC355032.1|FC355032
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162229186|gb|FC404545.1|FC404545
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37835778|gb|BJ593790.1|BJ593790
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67694331|gb|BJ954564.1|BJ954564
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162166454|gb|FC342436.1|FC342436
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162239806|gb|FC417205.1|FC417205
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACTTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|19790120|gb|BQ041642.1|BQ041642
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37851849|gb|BJ609857.1|BJ609857
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162262162|gb|FC437398.1|FC437398
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67573722|gb|BJ946546.1|BJ946546
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162274723|gb|FC450490.1|FC450490
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37826546|gb|BJ584558.1|BJ584558
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37827511|gb|BJ585523.1|BJ585523
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162259724|gb|FC436535.1|FC436535
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162261048|gb|FC437442.1|FC437442
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67704530|gb|BJ964763.1|BJ964763
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37843860|gb|BJ601868.1|BJ601868
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162259002|gb|FC435945.1|FC435945
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162240554|gb|FC416042.1|FC416042
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18367132|gb|BJ199213.1|BJ199213
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162178579|gb|FC355031.1|FC355031
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162204794|gb|FC381463.1|FC381463
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18348222|gb|BJ180269.1|BJ180269
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|208357849|gb|DC902345.1|DC902345
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCGTCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37847583|gb|BJ605591.1|BJ605591
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18352761|gb|BJ184816.1|BJ184816
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162242129|gb|FC418410.1|FC418410
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162248336|gb|FC422551.1|FC422551
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162259725|gb|FC436536.1|FC436536
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18354308|gb|BJ186364.1|BJ186364
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|7648202|gb|AW739185.1|AW739185
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|208398694|gb|DC916217.1|DC916217
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCGTCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37850592|gb|BJ608600.1|BJ608600
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTNGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67721232|gb|BJ971491.1|BJ971491
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACATGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|208394200|gb|DC933868.1|DC933868
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37827604|gb|BJ585616.1|BJ585616
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162225855|gb|FC402147.1|FC402147
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162229187|gb|FC404546.1|FC404546
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37822776|gb|BJ580842.1|BJ580842
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37834191|gb|BJ592203.1|BJ592203
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18333341|gb|BJ165355.1|BJ165355
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162242128|gb|FC418409.1|FC418409
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18373362|gb|BJ204940.1|BJ204940
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18348311|gb|BJ180358.1|BJ180358
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162275674|gb|FC451663.1|FC451663
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18347349|gb|BJ179395.1|BJ179395
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|18369328|gb|BJ201414.1|BJ201414
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162226801|gb|FC402807.1|FC402807
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162265208|gb|FC441295.1|FC441295
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67697110|gb|BJ957343.1|BJ957343
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|37826398|gb|BJ584410.1|BJ584410
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162166453|gb|FC342435.1|FC342435
EST:     TGAAACCAGTCCCCGGCGTCACCCGGGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|67703937|gb|BJ964170.1|BJ964170
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
EST: gi|162265656|gb|FC441619.1|FC441619
EST:     TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAAC                         ATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT
genomic: TGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 63

GCAGAGCCGTGGTGAGAAGAAGAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAACCAGTCCCCGGCGTCACCCGTGTGACAATCAAAAAGAGCAAGAACgtaagattca ... aatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC
                                         tgctaat  putative branch site (score: 63)
                         taatgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgattctccaattgttttattttccccttgaatctggtgatttcgaagttagtttcgttattctgcctctaatgtatgctctggctgctaatgtatcagATTTTGTTCGTAATCTCGAAGCCTGACGTGTTCAAGAGCCCAGCATCTGATGCTCACATCATCTTTGGAGAGGCGAAGATTGAGGATTTGAGCTCACAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA