1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggcattcacaaccatattctacaatacgaagctgccctctaaatctgatgttgtgatgtgttttggcactgatacgtgtctgtcaatgtttgggacgtcgttttatattaaggtagaccaagaggcttacattaattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAGGTGCATAAGACGGTGGAGCCGGATGAGATATTGTCGAGAACAGGGTTG
species | Physcomitrella patens |
transcript | PP1S11_387V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCEST: gi|208349799|gb|DC905923.1|DC905923
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACC
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAEST: gi|162212623|gb|FC389015.1|FC389015
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAEST: gi|208374380|gb|DC941165.1|DC941165
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAEST: gi|162174754|gb|FC352170.1|FC352170
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAEST: gi|208359561|gb|DC943145.1|DC943145
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
EST: CATGGTGATGGCGGTCGGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAEST: gi|162189385|gb|FC366543.1|FC366543
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
EST: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGT GTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
genomic: CATGGTGATGGCGGTCAGAAGCGCCGCTACCTCGTCCTTCCATCGCTTGTgtgggcattc ... aattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCA
tttgggacgtcgttttatattaaggtagaccaagaggcttacattaattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAGGTGCATAAGACGGTGGAGCCGGATGAGATATTGTCGAGAACAGGGTTG
cattaat putative branch site (score: 13)
ttttatattaaggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcattcacaaccatattctacaatacgaagctgccctctaaatctgatgttgtgatgtgttttggcactgatacgtgtctgtcaatgtttgggacgtcgttttatattaaggtagaccaagaggcttacattaattttgcagGTCAGGACGGATCTACATTGTAGACACGCTGAAGGACCCGCGGGCACCGCAGGTGCATAAGACGGTGGAGCCGGATGAGATATTGTCGAGAACAGGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG