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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtcctgatctatagttgccattcctgttttggcagttggaagcgactgttttgcttttgagctatattttgattctgtgtaattttcgtacatgcagTGGAATTGTTCGCTATGCAAGTGTGCATGCACATAAGGGAAGGACTGGGAGTAGGAAAGTCGACTTGGGATCACTGACTTATACTTTGGTATTCTTTATG

Basic information

species Physcomitrella patens
transcript PP1S117_214V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S117_214V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G158177_T01 (Zea mays), 3'ss of exon 1
cttgtcctgatctatagttgccattcctgttttggcagttggaagcgactgttttgcttttgagctatattttgattctgtgtaattttcgtacatgcagTGGAATTGTTCGCTATGCAAGTGTGCATGCACATAAGGGAAGGACTGGGAGTAGGAAAGTCGACTTGGGATCACTGACTTATACTTTGGTATTCTTTATG
            |    |||  | |  |  ||||         |         ||  ||    |  ||| |||     | |||| ||     | |  ||| |||| |||||||||||| ||||||||||| ||   |||||| ||||||||||||| ||  ||  | | ||| ||  | || ||  |  | ||  || | 
-----------gttcgtttgggaatattagtttgatgtgctttactactcacattatttcattggaatacttttgacatttgtatttgcttcataaacagGGGAACTGTTCGCTATGCTAGTGTGCATGCTCACTTGGGAAGAACTGGGAGTAGGAGAGATGATCTTGAATCCCTTGCATACACGCTTATTTTTCTTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgactgttttgcttttgagctatattttgattctgtgtaattttcgtacatgcagTGGAATTGTTCGCTATGCAAGTGTGCATGCACATAAGGGAAGGACTGGGAGTAGGAAAGTCGACTTGGGATCACTGACTTATACTTTGGTATTCTTTATG
                        ttttgat  putative branch site (score: 4)
                                        ttttcgt  putative PPT
                    tatattttgattct  TA-rich tract