1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacaggttgaagtgcctcaacttttgcaagcttctgcgatcaacttcacatgcgctttgatttcacaacaaaaatgtgtatatcatttgcttttgtgcagGATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAATGATGGAGCCACTATATTGAAGTCGCTACACGTTGATAACCCCGCTGCCA
species | Physcomitrella patens |
transcript | PP1S116_55V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGGCAATAGCAGACCTTGTCAAAAGCACCCTTGGACCTAAGGGAATG GATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAATEST: gi|208365322|gb|DC931204.1|DC931204
genomic: CAATGGCAATAGCAGACCTTGTCAAAAGCACCCTTGGACCTAAGGGAATGgtgcgctcca ... ttttgtgcagGATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAAT
EST: CAATGGCAATAGCAGACCTTGTCAAAAGCACCCTTGGACCTAAGGGAATG GATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAAT
genomic: CAATGGCAATAGCAGACCTTGTCAAAAGCACCCTTGGACCTAAGGGAATGgtgcgctcca ... ttttgtgcagGATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAAT
tcacatgcgctttgatttcacaacaaaaatgtgtatatcatttgcttttgtgcagGATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAATGATGGAGCCACTATATTGAAGTCGCTACACGTTGATAACCCCGCTGCCA
ctttgat putative branch site (score: 2)
tttgctttt putative PPT
aaaaatgtgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaggttgaagtgcctcaacttttgcaagcttctgcgatcaacttcacatgcgctttgatttcacaacaaaaatgtgtatatcatttgcttttgtgcagGATAAAATTCTTCAATCTACTGGTCGCGGCCACAGCGTGACGGTTACGAATGATGGAGCCACTATATTGAAGTCGCTACACGTTGATAACCCCGCTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - cacatgc