1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtcagggcgtggatgctgcatagtttatttttgttgaaggttaattttttcacgtattattttcctgaaagatcttacaatgatgaaatgctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACGTGGGCGTTAATTTTGTATTCTAGTGCCCTTTTTAGGGTTTCCATTGTA
species | Physcomitrella patens |
transcript | PP1S116_13V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTG GCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACEST: gi|162218816|gb|FC394359.1|FC394359
genomic: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTGgtatgttggt ... gctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGAC
EST: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTG GCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACEST: gi|67573459|gb|BJ946283.1|BJ946283
genomic: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTGgtatgttggt ... gctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGAC
EST: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTG GCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACEST: gi|18370357|gb|BJ201959.1|BJ201959
genomic: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTGgtatgttggt ... gctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGAC
EST: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTG GCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGAC
genomic: GCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTGgtatgttggt ... gctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGAC
ttttttcacgtattattttcctgaaagatcttacaatgatgaaatgctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACGTGGGCGTTAATTTTGTATTCTAGTGCCCTTTTTAGGGTTTCCATTGTA
atcttac putative branch site (score: 3)
tgctctt putative PPT
tattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcagggcgtggatgctgcatagtttatttttgttgaaggttaattttttcacgtattattttcctgaaagatcttacaatgatgaaatgctcttgcagGCAAACCTGTGGGTAGAGGAAGAGGACGCGGTCGTGGCAGGGGACGTGGACGTGGGCGTTAATTTTGTATTCTAGTGCCCTTTTTAGGGTTTCCATTGTA
- - - - - - - tgctgca
- - - - - - - - - - - - - - - - tgttgaa