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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAGCTATGGAAAGGTGGCAAGCACCGCCTTGGCATATGCAATGAATGACGA

Basic information

species Physcomitrella patens
transcript PP1S115_125V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100393349|gb|BY989833.1|BY989833
EST:     GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA                         GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: gi|18365746|gb|BJ197823.1|BJ197823
EST:     GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA                         GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: gi|18327622|gb|BJ159625.1|BJ159625
EST:     GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA                         GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
EST: gi|208361290|gb|DC930329.1|DC930329
EST:     GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAA                         GAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA
genomic: GAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcct ... aacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcagGAAGAATTCCTTTTTCATATCTGGAGGATATCCACATGAGGTTCATGAAAAGCTATGGAAAGGTGGCAAGCACCGCCTTGGCATATGCAATGAATGACGA
            cgctaat  putative branch site (score: 3)
               taatagttttattctt  TA-rich tract