1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaatttggaagaatgattcgcaaaagagggttttgacctggttttcaccgttaaacaataatgcaggagcttatctgatctgtctatacatcattttcagcagtttgtagctcgaggaatacctgatttcgtagtaccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAGTTTGATGGCATTCTCGGCCTTGGCTTCAAGGAGATTTCCGTTGATCGAG
species | Physcomitrella patens |
transcript | PP1S113_31V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAACCTACGAANGAGCCTGGTGTCACATTTGTCTCAGCCAAGEST: gi|208370860|gb|DC936898.1|DC936898
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAGEST: gi|67717411|gb|BJ967670.1|BJ967670
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAAGCTACNAAGGAGCCTGGTGTCACATTTGTCTCANCCAAGEST: gi|162235503|gb|FC411833.1|FC411833
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAGEST: gi|208378113|gb|DC902586.1|DC902586
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCCGAAGCTACGAANGAGCCTGGTGTCACATTTGTCTCAGCCAAGEST: gi|100415055|gb|BY975143.1|BY975143
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAAGCTACGAAGGAGCCTGGTGGCACATTTGTCTCACCCAAGEST: gi|162151133|gb|FC327652.1|FC327652
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
EST: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAG GTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
genomic: TCTTGAGCCAAGACGACGTTACTCTTGGTGACCTCACAGTGAAATGGCAGgtgaatttgg ... ccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAG
cattttcagcagtttgtagctcgaggaatacctgatttcgtagtaccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAGTTTGATGGCATTCTCGGCCTTGGCTTCAAGGAGATTTCCGTTGATCGAG
acctgat putative branch site (score: 3)
tacctttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatttggaagaatgattcgcaaaagagggttttgacctggttttcaccgttaaacaataatgcaggagcttatctgatctgtctatacatcattttcagcagtttgtagctcgaggaatacctgatttcgtagtaccttttgcagGTCTTTGCTGAAGCTACGAAGGAGCCTGGTGTCACATTTGTCTCAGCCAAGTTTGATGGCATTCTCGGCCTTGGCTTCAAGGAGATTTCCGTTGATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT