1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaatgcttgagacaaccttgttttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGTTAAGCTAGTTGCAAGATGTTTATTGCATCTGGGAACTCTTTAAATGTT
species | Physcomitrella patens |
transcript | PP1S10_385V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGEST: gi|18339322|gb|BJ171349.1|BJ171349
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGNGGCCAAGGCCAATCGEST: gi|162264108|gb|FC439962.1|FC439962
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162244226|gb|FC423777.1|FC423777
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|67695036|gb|BJ955269.1|BJ955269
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162278970|gb|FC454709.1|FC454709
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208388685|gb|DC941512.1|DC941512
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCACCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|37840034|gb|BJ598042.1|BJ598042
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|15320074|gb|BI487619.1|BI487619
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208359837|gb|DC939253.1|DC939253
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|37828345|gb|BJ586357.1|BJ586357
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208355680|gb|DC929944.1|DC929944
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|37838797|gb|BJ596805.1|BJ596805
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162259134|gb|FC436428.1|FC436428
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|100446608|gb|CJ970907.1|CJ970907
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162206803|gb|FC382665.1|FC382665
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162209867|gb|FC386009.1|FC386009
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162236902|gb|FC412645.1|FC412645
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162209866|gb|FC386008.1|FC386008
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|67724613|gb|BJ974872.1|BJ974872
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|19782721|gb|BQ039897.1|BQ039897
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162200301|gb|FC376625.1|FC376625
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162264107|gb|FC439961.1|FC439961
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162200276|gb|FC376616.1|FC376616
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208364441|gb|DC954516.1|DC954516
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCACCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|15327572|gb|BI488326.1|BI488326
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACAAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCEST: gi|18349401|gb|BJ181450.1|BJ181450
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATC
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAEST: gi|162240704|gb|FC416309.1|FC416309
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAA
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGEST: gi|208391438|gb|DC937586.1|DC937586
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|18334842|gb|BJ166859.1|BJ166859
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGNATGAGATCGAGCGTGEST: gi|162276868|gb|FC452550.1|FC452550
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208371313|gb|DC944477.1|DC944477
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162278969|gb|FC454708.1|FC454708
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|100384864|gb|BY969599.1|BY969599
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAAGGC-AATCEST: gi|7047347|gb|AW477241.1|AW477241
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAA-GGCCAATC
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162260600|gb|FC436604.1|FC436604
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208361251|gb|DC957720.1|DC957720
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|18362813|gb|BJ194885.1|BJ194885
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGEST: gi|208364350|gb|DC950651.1|DC950651
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208384711|gb|DC907142.1|DC907142
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208345761|gb|DC921016.1|DC921016
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162276867|gb|FC452549.1|FC452549
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162259135|gb|FC436429.1|FC436429
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162236903|gb|FC412646.1|FC412646
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|19785398|gb|BQ040312.1|BQ040312
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162204887|gb|FC381205.1|FC381205
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208385149|gb|DC923557.1|DC923557
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|37841325|gb|BJ599333.1|BJ599333
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|67507768|gb|BJ940646.1|BJ940646
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208400565|gb|DC904541.1|DC904541
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162204142|gb|FC378900.1|FC378900
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTTTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|7583604|gb|AW699513.1|AW699513
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTAGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACTCCATCTAGAAGAACGATGAGATCGAGCGTGTGGCCAACGCCAATCGEST: gi|162244225|gb|FC423776.1|FC423776
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGTTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|67579044|gb|BJ951195.1|BJ951195
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162235182|gb|FC411265.1|FC411265
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162206802|gb|FC382664.1|FC382664
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162200302|gb|FC376626.1|FC376626
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|7207340|gb|AW561343.1|AW561343
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|208356234|gb|DC918432.1|DC918432
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGNTAAAGGGTCTTCCAACAG CTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162215111|gb|FC390749.1|FC390749
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGEST: gi|162216079|gb|FC392912.1|FC392912
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
EST: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAG CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
genomic: GAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgct ... cttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCG
gttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGTTAAGCTAGTTGCAAGATGTTTATTGCATCTGGGAACTCTTTAAATGTT
gactgat putative branch site (score: 125)
cttgttcc putative PPT
tgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatgcttgagacaaccttgttttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccagCTACGCCATCAAGAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCCAATCGTTAAGCTAGTTGCAAGATGTTTATTGCATCTGGGAACTCTTTAAATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG