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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttacgagctaggattacttcagtcctataattgagataagagcacagaataatgcaagtttgtattcgtacacctaactcctcctgatatctgtagGTATTTACCAATAACATGAGTCTCAAATCTGAACCCAAGATCACCACATGCAAGGCTAACGAGAACTGGACGAAAGTTTCATTCAAACCAGATCTTTCCA

Basic information

species Physcomitrella patens
transcript PP1S109_208V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S109_208V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G23890.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------------------------------------------------gtacagttacga--gctaggattacttca--gtcctataattgagataagagcacagaataatgcaagtttg---tattcgtacacctaactcctcctgatatc--tgtagGTATTTACCAATAACATGAGTCTCAAATCTGAACCCAAGATCACCACATGCAAGGCTAACGAGAACTGGACGAAAGTTTCATTCAAACCAGATCTTTCCA
                                                                  |    || |||  | ||   ||  || |   | || |  |||   |    |     | |  |||    |||     ||     ||  ||||  | ||| |     | ||||| |||   || |||||| |    |||||||||||    || ||||  || ||    |  |||||||||||||| ||| |||||||||||||| |    |
gtattgaatcgtttattgcttctgtgatgttgttgttgcatttgtggccttcgttgagttttatgatctgatttcgattgatacagttgttttatgattctgtg-ttgttgttgatgtttcaattgttgcgtaattgattcgtttaggaactgaacttttactggtgatgatttagGTCTTTGAGAACAACATGGGGAAGAAATCTGAACCGGTTATAACCAAGTGTAATAAGAGTGAGAACTGGACGAAGGTTACATTCAAACCAGATTTGAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacagaataatgcaagtttgtattcgtacacctaactcctcctgatatctgtagGTATTTACCAATAACATGAGTCTCAAATCTGAACCCAAGATCACCACATGCAAGGCTAACGAGAACTGGACGAAAGTTTCATTCAAACCAGATCTTTCCA
                 tttgtatt  TA-rich tract