1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catcgagacatgcggttatgggtttttcatgccgtaagctatgacaggaatgacaccagatcgtggctagtactgatgaagtatttctgatacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGACTTGCGTGGGCTTGCGGGTGGGCTCGATGGAGTGCGCTCCTCTGTTAT
species | Physcomitrella patens |
transcript | PP1S108_171V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAA-GAAAATGATACCAATCGGAGGGTCATCATTGTGGGGTCGATTACGG GAAACACGAACACEST: gi|100362358|gb|BY947319.1|BY947319
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACAC
EST: TAAAGAAAATGATACCNATCGGAGGGTCATCATTGTGGGTTCGATTACAG GNAACACGAACACAATAGCAGGAAACGTGCCGCCGAAAGGCTAAC-TTGGCEST: gi|162194332|gb|FC368515.1|FC368515
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAA-GGCTAACCTTGGC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|208397411|gb|DC908273.1|DC908273
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGANGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAAC-TTGGCGEST: gi|162195447|gb|FC369330.1|FC369330
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAAGCTAACCTTGGCGEST: gi|208366975|gb|DC951462.1|DC951462
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCCATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|162226798|gb|FC402804.1|FC402804
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100405161|gb|BY955393.1|BY955393
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TNAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGGTCGATTACAG GGAACACGAACACAATAGCAGGAAACGTGCCGGCGAAG-CTAACCTTGGCGEST: gi|100364905|gb|BY947967.1|BY947967
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGGTCGATTACAG GAAACACGAACACAATAGCAGGAAAACGTGC-GCCGAAGGCTAACCTTGGCEST: gi|100385885|gb|BY951079.1|BY951079
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAA-CGTGCCGCCGAAGGCTAACCTTGGC
EST: TAAAGAAA-TGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACNG GGAACACGAACACNATAGCAGGAAACGTGCCGCCGA-GGCTAACCTTGGCGEST: gi|162268440|gb|FC444313.1|FC444313
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GANACACGAACACAATAGCAGGAAACGTGCCGCEST: gi|100362882|gb|BY947576.1|BY947576
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GNAACACGAAACACA-TAGCAGGGAACGTGCCGCCGAAGGCTAACCTTGGCEST: gi|100391095|gb|BY953105.1|BY953105
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAA-CACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGC
EST: AA-GAAAATGATACCAATCGGAGGGTCATCATTGGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGGAACGTGCCGCCGAEST: gi|100362916|gb|BY947593.1|BY947593
genomic: AAAGAAAATGATACCAATCGGAGGGTCATCATTG-TGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGA
EST: AAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACNAG -AAACACGAAACACA-TAGCAGGAAACGTGCCCGC-GAAAGCTAACCTTGEST: gi|162198148|gb|FC372565.1|FC372565
genomic: AAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTAC-AGgtaaattcgc ... tacgtctcagGAAACACGAA-CACAATAGCAGGAAACGTGCC-GCCGAAGGCTAACCTTG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100414451|gb|BY992781.1|BY992781
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: AAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTTCGAT-ACGG GAAACACGAACACAATAGCEST: gi|162249935|gb|FC427036.1|FC427036
genomic: AAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTT-CGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100417996|gb|BY993286.1|BY993286
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACNG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|208377340|gb|DC906623.1|DC906623
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCNATTACAG GAAACACNAACACAATANCAGGAAACGTGCCGCCNAAG-CTAACEST: gi|162168831|gb|FC345029.1|FC345029
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAAC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|208350263|gb|DC901619.1|DC901619
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100402628|gb|BY954930.1|BY954930
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCCATCGGAAGGTCATCATTGTGGGGTCGATTACNG GAAACACGNACACAATAGCAGGAAEST: gi|100397784|gb|BY990399.1|BY990399
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAA
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100389050|gb|BY952254.1|BY952254
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCCATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGGAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|162161210|gb|FC337273.1|FC337273
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100401185|gb|BY990873.1|BY990873
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACGG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAAGGCTA-CCTTGGCEST: gi|162239406|gb|FC416792.1|FC416792
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAA-GGCTAACCTTGGC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCEST: gi|100402338|gb|BY954786.1|BY954786
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGC
EST: TAAAGAAAATGATACAAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GGAAACACGAACACAATAGCAGGAAAEST: gi|100448131|gb|CJ972430.1|CJ972430
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagG-AAACACGAACACAATAGCAGGAAA
EST: TAAAGAAAATGATACCAATCGGANGGTCATCATTGTGGGTNCGATTAC-G GNAAACACGAACACEST: gi|100398684|gb|BY990464.1|BY990464
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagG-AAACACGAACAC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACGG GAAACACGAACACEST: gi|162167962|gb|FC344900.1|FC344900
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACAC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|162243479|gb|FC425175.1|FC425175
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100389487|gb|BY988965.1|BY988965
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCEST: gi|162254718|gb|FC431007.1|FC431007
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGC
EST: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGEST: gi|100358946|gb|BY946768.1|BY946768
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCG
EST: TAAAGAAAATGATACCCATCGGAGGGTCATCATTGTGGGTTCGATTACAG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCEST: gi|100397055|gb|BY953962.1|BY953962
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACC
EST: TAAAGAAAATGATACCNATCGGAGGGTCATCATTGTGGGTTCGATTACNG GAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAAGCTAACCTT
genomic: TAAAGAAAATGATACCAATCGGAGGGTCATCATTGTGGGTTCGATTACAGgtaaattcgc ... tacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTT
aggaatgacaccagatcgtggctagtactgatgaagtatttctgatacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGACTTGCGTGGGCTTGCGGGTGGGCTCGATGGAGTGCGCTCCTCTGTTAT
aagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcgagacatgcggttatgggtttttcatgccgtaagctatgacaggaatgacaccagatcgtggctagtactgatgaagtatttctgatacgtctcagGAAACACGAACACAATAGCAGGAAACGTGCCGCCGAAGGCTAACCTTGGCGACTTGCGTGGGCTTGCGGGTGGGCTCGATGGAGTGCGCTCCTCTGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC