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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttccctctccaagattctcttgattatttgaggcgaagacgatggctatggaggacatgctccggccatgtctgttagagcagctgtcgtgtagtgatttgcatgattactttgtatccgtcgaatattttcttatgaggcatctaattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCCACCCTGCGTACATGACGAAGGAGAGGCTCGCCAAAGCCAAGAACCTCGA

Basic information

species Physcomitrella patens
transcript PP1S106_16V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384946|gb|DC903453.1|DC903453
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|162272414|gb|FC449053.1|FC449053
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|18330797|gb|BJ162803.1|BJ162803
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100433033|gb|BY978779.1|BY978779
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100442391|gb|BY981415.1|BY981415
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCCTTC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCC-TTC
EST: gi|100443652|gb|BY963749.1|BY963749
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100376437|gb|BY986166.1|BY986166
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100389978|gb|BY989058.1|BY989058
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100423908|gb|BY976585.1|BY976585
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100388263|gb|BY951865.1|BY951865
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100398640|gb|BY990442.1|BY990442
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100385283|gb|BY950875.1|BY950875
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100358870|gb|BY946730.1|BY946730
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|208361729|gb|DC934969.1|DC934969
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100442905|gb|BY963400.1|BY963400
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100440203|gb|BY962116.1|BY962116
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100414968|gb|BY975102.1|BY975102
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100402552|gb|BY954892.1|BY954892
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|162264750|gb|FC440317.1|FC440317
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|208361815|gb|DC939037.1|DC939037
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|18373891|gb|BJ205469.1|BJ205469
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100424612|gb|BY976727.1|BY976727
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100361536|gb|BY984055.1|BY984055
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100353592|gb|BY964884.1|BY964884
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100398916|gb|BY990580.1|BY990580
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|208363654|gb|DC935349.1|DC935349
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100386649|gb|BY970190.1|BY970190
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|18346203|gb|BJ178246.1|BJ178246
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100396166|gb|BY972267.1|BY972267
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTTC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|67574343|gb|BJ947167.1|BJ947167
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100433798|gb|BY960712.1|BY960712
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AAACTGGATAA-GAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAA-CTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTC
EST: gi|162266592|gb|FC441978.1|FC441978
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100422587|gb|BY976448.1|BY976448
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|162274536|gb|FC450979.1|FC450979
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|22491841|gb|BU051764.1|BU051764
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100351703|gb|BY964507.1|BY964507
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTT
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTT
EST: gi|100359398|gb|BY984234.1|BY984234
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100378561|gb|BY968661.1|BY968661
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100388495|gb|BY952097.1|BY952097
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100422802|gb|BY958008.1|BY958008
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100436049|gb|BY979354.1|BY979354
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100446294|gb|CJ970593.1|CJ970593
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100445835|gb|CJ970134.1|CJ970134
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100361912|gb|BY947689.1|BY947689
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100452339|gb|CJ975221.1|CJ975221
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100445486|gb|CJ975635.1|CJ975635
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|208384825|gb|DC907438.1|DC907438
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100397747|gb|BY990380.1|BY990380
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100364728|gb|BY947878.1|BY947878
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100385568|gb|BY969905.1|BY969905
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|67573259|gb|BJ946083.1|BJ946083
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100426321|gb|BY958839.1|BY958839
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100401401|gb|BY990984.1|BY990984
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100362785|gb|BY947527.1|BY947527
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100452865|gb|CJ975482.1|CJ975482
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100366110|gb|BY967284.1|BY967284
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100441331|gb|BY962620.1|BY962620
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100452623|gb|CJ975362.1|CJ975362
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTTGATCACTACGCCCTTC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTT-GATCACTACGCCCTTC
EST: gi|18332361|gb|BJ164374.1|BJ164374
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
EST: gi|100396260|gb|BY972314.1|BY972314
EST:     AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTG                         AACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC
genomic: AAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 45

TTTCTGGGATGTGTCGAAAACGCTTTGGGAATTCGCGAGTGGTTGGAATCAAAAGGCCACAAGTACGTTGTTACTTCCGACAAGGATGGCCCTGACTCTGgtacgtttcc ... aattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCCACCCTGCGTACATGACGAAGGAGAGGCTCGCCAAAGCCAAGAACCTCGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgattactttgtatccgtcgaatattttcttatgaggcatctaattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCCACCCTGCGTACATGACGAAGGAGAGGCTCGCCAAAGCCAAGAACCTCGA
                                         atctaat  putative branch site (score: 45)
                       aatattttcttatga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtttccctctccaagattctcttgattatttgaggcgaagacgatggctatggaggacatgctccggccatgtctgttagagcagctgtcgtgtagtgatttgcatgattactttgtatccgtcgaatattttcttatgaggcatctaattgtgcagAACTGGATAAAGAGTTAGCTGACGCACACATTTTGATCACTACGCCCTTCCACCCTGCGTACATGACGAAGGAGAGGCTCGCCAAAGCCAAGAACCTCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC