Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgatttcttaattcgagtcttctctagttcggggttcttgtcgccgccttttagaagttattgtcctcacgattgacgtcatgttcttgttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGACTCAAAAGGCTAGCCTTCGTGAAGCTTACAGCAAGAAGAAGTACCTTCCG

Basic information

species Physcomitrella patens
transcript PP1S102_67V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206021|gb|FC382806.1|FC382806
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162204276|gb|FC379749.1|FC379749
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162253832|gb|FC430557.1|FC430557
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162245542|gb|FC423277.1|FC423277
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162215713|gb|FC391727.1|FC391727
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162230834|gb|FC406673.1|FC406673
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTTTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67720570|gb|BJ970829.1|BJ970829
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162238304|gb|FC415872.1|FC415872
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|37849570|gb|BJ607578.1|BJ607578
EST:     TTGAGGGTTACCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162220488|gb|FC396025.1|FC396025
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67698434|gb|BJ958667.1|BJ958667
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162238136|gb|FC414274.1|FC414274
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162244284|gb|FC419857.1|FC419857
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|37823743|gb|BJ581809.1|BJ581809
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162254273|gb|FC429992.1|FC429992
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67702078|gb|BJ962311.1|BJ962311
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162272612|gb|FC447731.1|FC447731
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162226049|gb|FC401327.1|FC401327
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|7286858|gb|AW599345.1|AW599345
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|37837467|gb|BJ595475.1|BJ595475
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162279790|gb|FC455698.1|FC455698
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162206022|gb|FC382807.1|FC382807
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162252224|gb|FC425902.1|FC425902
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|37822073|gb|BJ580139.1|BJ580139
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162252880|gb|FC429253.1|FC429253
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162211289|gb|FC387519.1|FC387519
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162220487|gb|FC396024.1|FC396024
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162272198|gb|FC448707.1|FC448707
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162203169|gb|FC379266.1|FC379266
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67700386|gb|BJ960619.1|BJ960619
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|7287428|gb|AW599915.1|AW599915
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67716488|gb|BJ966748.1|BJ966748
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|208392372|gb|DC904232.1|DC904232
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162233140|gb|FC408963.1|FC408963
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162213727|gb|FC390342.1|FC390342
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162215298|gb|FC391066.1|FC391066
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162230835|gb|FC406674.1|FC406674
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162207896|gb|FC383602.1|FC383602
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|7584135|gb|AW700032.1|AW700032
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTCTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|18358100|gb|BJ190159.1|BJ190159
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|18375472|gb|BJ207050.1|BJ207050
EST:     TTGAGGGTTACCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162226387|gb|FC403303.1|FC403303
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         -----TGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67576850|gb|BJ949674.1|BJ949674
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|6102401|gb|AW126871.1|AW126871
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162226881|gb|FC403069.1|FC403069
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67574998|gb|BJ947822.1|BJ947822
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162224425|gb|FC399801.1|FC399801
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162268526|gb|FC444399.1|FC444399
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|18344543|gb|BJ176584.1|BJ176584
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162203168|gb|FC379265.1|FC379265
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162254272|gb|FC429991.1|FC429991
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|67725002|gb|BJ975261.1|BJ975261
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162263612|gb|FC438874.1|FC438874
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|162238303|gb|FC415871.1|FC415871
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
EST: gi|208351271|gb|DC918130.1|DC918130
EST:     TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGAT                         CAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC
genomic: TTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 30 (downstream exon)
Score: 75

TTGAAGGAGCTGAAGGCCGAGCTCGCTGCCTTGAGGGTTGCCAAGGTTACTGGAGGCGCTCCCAACAAGCTGTCTAAGATgtaatttgct ... gttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGACTCAAAAGGCTAGCCTTCGTGAAGCTTACAGCAAGAAGAAGTACCTTCCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgccttttagaagttattgtcctcacgattgacgtcatgttcttgttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGACTCAAAAGGCTAGCCTTCGTGAAGCTTACAGCAAGAAGAAGTACCTTCCG
                                        ttcttgttcct  CT-rich tract
     ttttagaagttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcgatttcttaattcgagtcttctctagttcggggttcttgtcgccgccttttagaagttattgtcctcacgattgacgtcatgttcttgttcctgcagCAAAGTGGTTAGGCTGTCGATTGCACAGGTTTTGACCGTCATCTCTCAGACTCAAAAGGCTAGCCTTCGTGAAGCTTACAGCAAGAAGAAGTACCTTCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT