1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attcttttatttgaagcgagaagcttgtgccttacacatccagtggggtatatttggaggtaccatggtctcatcgaatgccactgtaatgtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAGGCACCGAAGGTGAAATGCAAGACCAAG
species | Physcomitrella patens |
transcript | PP1S102_139V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|162223007|gb|FC399638.1|FC399638
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|18346051|gb|BJ178094.1|BJ178094
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|162275672|gb|FC451661.1|FC451661
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|208381403|gb|DC927839.1|DC927839
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|162223269|gb|FC400238.1|FC400238
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|162275673|gb|FC451662.1|FC451662
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAEST: gi|208353937|gb|DC914091.1|DC914091
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
EST: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCA AGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
genomic: AATCTTCTCAACTTTGAAATCACCATTCGGCCAGATGAGGGTTACTATCAgtgagtcctt ... gtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGA
gggtatatttggaggtaccatggtctcatcgaatgccactgtaatgtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAGGCACCGAAGGTGAAATGCAAGACCAAG
tgttttt CT-rich tract
taatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttttatttgaagcgagaagcttgtgccttacacatccagtggggtatatttggaggtaccatggtctcatcgaatgccactgtaatgtttttgcagAGGTGGCACGTTTGTCTTTAGCTTCTCGATCTCACAGGTGTATCCTCACGAGGCACCGAAGGTGAAATGCAAGACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - cacatcc