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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcggtgtgatgtaatgttctaatgtacagttgcgaagagcaatccctgaggattttagctttaacgattgtggacttatcgaagaatctatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAAGAGGCAAGGGTACAAGCCTATTAACTGTACGAGCGTGAACGGTCACAGA

Basic information

species Physcomitrella patens
transcript PP1S101_254V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256410|gb|FC432441.1|FC432441
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|208374807|gb|DC936430.1|DC936430
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100412621|gb|BY974825.1|BY974825
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100386356|gb|BY988023.1|BY988023
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100435307|gb|BY979177.1|BY979177
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100424461|gb|BY958499.1|BY958499
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100447407|gb|CJ971706.1|CJ971706
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
EST: gi|100447901|gb|CJ972200.1|CJ972200
EST:     GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAA                         AGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA
genomic: GCAAAAGATACCGTTTCACTGGATGAAACACTGAGGTTGATAGACTGCAAgtaaggttta ... tatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgaggattttagctttaacgattgtggacttatcgaagaatctatttcacagAGAGCAACAGAGGAAGTTAGTAGATGCAGAGCTGGAGTTAGCTGCAGCAAAGAGGCAAGGGTACAAGCCTATTAACTGTACGAGCGTGAACGGTCACAGA
               ctttaac  putative branch site (score: 3)
                                           tctatttc  putative PPT
                                         aatctattt  TA-rich tract