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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccctccttaactctccaactccatgagattttccaaactccatcacttctgtcgatgacacatgcatcgagatcgcgcaacataggaagaaaaataaccacaaaaaccgaaaatcgtcaacatagtctaccccggtgcaatacaggcgacaatcgcttacgagggcttgtgatgggcgcattttcacacagGGGAAGAGCGATTTATTCTCTCGGTTCATGCGACTGGAGGAAGACGACTCGGACATCCAGTTCACCGACAAGAACTTCCGCGACACGCTGCTAAATTTCA

Basic information

species Physcomitrella patens
transcript PP1S101_206V6.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatacaggcgacaatcgcttacgagggcttgtgatgggcgcattttcacacagGGGAAGAGCGATTTATTCTCTCGGTTCATGCGACTGGAGGAAGACGACTCGGACATCCAGTTCACCGACAAGAACTTCCGCGACACGCTGCTAAATTTCA
                 cgcttac  putative branch site (score: 3)
                                          cattttc  putative PPT
                                           attttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtccctccttaactctccaactccatgagattttccaaactccatcacttctgtcgatgacacatgcatcgagatcgcgcaacataggaagaaaaataaccacaaaaaccgaaaatcgtcaacatagtctaccccggtgcaatacaggcgacaatcgcttacgagggcttgtgatgggcgcattttcacacagGGGAAGAGCGATTTATTCTCTCGGTTCATGCGACTGGAGGAAGACGACTCGGACATCCAGTTCACCGACAAGAACTTCCGCGACACGCTGCTAAATTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT