1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaaatttgcactccaatgatgggtattccagtattcagtttggaattgcgaagtgtgagtctgatgcttgcagttgggtatttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATTCTGATTCACGTGTGCGGCTCTACCCTGGCTGTTTACTGATTCGATGTG
species | Physcomitrella patens |
transcript | PP1S101_102V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATEST: gi|162169723|gb|FC345260.1|FC345260
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATAT
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATEST: gi|208362017|gb|DC943472.1|DC943472
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATAT
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATEST: gi|19790185|gb|BQ041743.1|BQ041743
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATAT
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTTTAGANAGCTCAAGAGTGGGEST: gi|100412788|gb|BY992436.1|BY992436
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGG
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATEST: gi|208357531|gb|DC934053.1|DC934053
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATAT
EST: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAG GTATTGACGCCATCCATACCTTCCTT
genomic: AGCAATTGCATATTCAGTTCGCTCAGATGTTCCCTGGGATGAAGTACGAGgtaagaaatt ... atttctccagGTATTGACGCCATCCATACCTTCCTT
tcagtttggaattgcgaagtgtgagtctgatgcttgcagttgggtatttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATTCTGATTCACGTGTGCGGCTCTACCCTGGCTGTTTACTGATTCGATGTG
gtctgat putative branch site (score: 5)
tatttctcc putative PPT
tatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaatttgcactccaatgatgggtattccagtattcagtttggaattgcgaagtgtgagtctgatgcttgcagttgggtatttctccagGTATTGACGCCATCCATACCTTCCTTTAGAAAGCTCAAGAGTGGGAGATATTCTGATTCACGTGTGCGGCTCTACCCTGGCTGTTTACTGATTCGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT