1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcctacattttcattgaaagtcgcttttctgcattctgttttgagttattttgtgtttcatggttttatatataaaaataaataaactggttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGACCTATTATTGAAGGATTCAACACCAGTTGCTCGTCGATTCTTCAATAC
species | Physcomitrella patens |
transcript | PP1S100_87V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|162175019|gb|FC351126.1|FC351126
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|208398270|gb|DC920697.1|DC920697
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|208370758|gb|DC948267.1|DC948267
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|162177445|gb|FC353706.1|FC353706
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|37850620|gb|BJ608628.1|BJ608628
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|208396220|gb|DC924014.1|DC924014
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|162175018|gb|FC351125.1|FC351125
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGEST: gi|162177444|gb|FC353705.1|FC353705
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
EST: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTG GTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
genomic: GGCTTTGACTCAGCTCACACGTTCATTGAGCGAGGAGCTACAAGCAGCTGgtactttcga ... gttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGG
gttattttgtgtttcatggttttatatataaaaataaataaactggttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGACCTATTATTGAAGGATTCAACACCAGTTGCTCGTCGATTCTTCAATAC
tttgtgtttcatggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctacattttcattgaaagtcgcttttctgcattctgttttgagttattttgtgtttcatggttttatatataaaaataaataaactggttagtgcagGTCTAAGCAGCATTGGAGTGCATAACCTTTCACCAGGCATGGTCCTGACGGACCTATTATTGAAGGATTCAACACCAGTTGCTCGTCGATTCTTCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - -ttctgca