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gtttgtaccttaatctttttaatatgggaaatttagtaacagtgtagtgtcggcgagaaccttaatcatttaactgttatggcgtcatgagattttgcattacataacttaaggttactgatgtgctcatgttgtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTACTGAGCCACCTACAGATGATCTTATGGATCGGAAACCAGTTGGAAGAA
species | Physcomitrella patens |
transcript | PP1S8_288V6.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162259197|gb|FC435217.1|FC435217
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162153113|gb|FC329519.1|FC329519
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162189370|gb|FC366528.1|FC366528
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: CCGCAGTGCAG -TGTTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCEST: gi|162155067|gb|FC330861.1|FC330861
genomic: CCGCAGTGCAGgtttgtacct ... gtgctggtagTTG-TTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGC
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|100367439|gb|BY984706.1|BY984706
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162175273|gb|FC351471.1|FC351471
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162186821|gb|FC363065.1|FC363065
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTEST: gi|162272382|gb|FC449034.1|FC449034
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
EST: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAG TTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
genomic: ATTTTGTCGCATCAATTTCCACTGGAGAGGTCCCTCTGACCGCAGTGCAGgtttgtacct ... gtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCT
gagattttgcattacataacttaaggttactgatgtgctcatgttgtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTACTGAGCCACCTACAGATGATCTTATGGATCGGAAACCAGTTGGAAGAA
tactgat putative branch site (score: 92)
attacataacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaccttaatctttttaatatgggaaatttagtaacagtgtagtgtcggcgagaaccttaatcatttaactgttatggcgtcatgagattttgcattacataacttaaggttactgatgtgctcatgttgtgctggtagTTGTTATGGGTCAATTTGATCATGGACACTTTGGGAGCACTTGCACTTGCTACTGAGCCACCTACAGATGATCTTATGGATCGGAAACCAGTTGGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA