1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtaggcctcaccttcagtgcttgttacaacacgagtctgcattggcggagcagtataaatatctctctgggttttccccttcaggaatctgcttagagagctagcctctatttcgtttgcaaatcatgagcttctgcaagttcacttcagtattttaatgaattttttagactttcttaacagtttctgtatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTAGGTTCGCTTGGAGAGAAATACAACGTGGTGCGTCATGAGAGCGACACT
species | Physcomitrella patens |
transcript | PP1S35_209V6.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTEST: gi|162157670|gb|FC332992.1|FC332992
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTEST: gi|162157669|gb|FC332991.1|FC332991
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTEST: gi|37822150|gb|BJ580216.1|BJ580216
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTEST: gi|162158276|gb|FC334695.1|FC334695
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTEST: gi|162163408|gb|FC339734.1|FC339734
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
EST: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAG TGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
genomic: GACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctca ... tatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGT
cttcagtattttaatgaattttttagactttcttaacagtttctgtatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTAGGTTCGCTTGGAGAGAAATACAACGTGGTGCGTCATGAGAGCGACACT
tcttaac putative branch site (score: 11)
tttctgt putative PPT
tattttaatgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcctcaccttcagtgcttgttacaacacgagtctgcattggcggagcagtataaatatctctctgggttttccccttcaggaatctgcttagagagctagcctctatttcgtttgcaaatcatgagcttctgcaagttcacttcagtattttaatgaattttttagactttcttaacagtttctgtatctggcagTGGGGAGCCTACACCTCGATTCAAGGCTTTCATGAACCATGTGGTCAAGGTAGGTTCGCTTGGAGAGAAATACAACGTGGTGCGTCATGAGAGCGACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA