1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...gagggcattgtaagactttgaagtgttacttcagcaacttattctttgccccattgaggccagtgtcttccatgtggaataattggttgtcatctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATCTTTTCCCCAACCATAAG
species | Physcomitrella patens |
transcript | PP1S129_147V6.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162197287|gb|FC372249.1|FC372249
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162167451|gb|FC343154.1|FC343154
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162177883|gb|FC355133.1|FC355133
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162243942|gb|FC424286.1|FC424286
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162197288|gb|FC372250.1|FC372250
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162242202|gb|FC415841.1|FC415841
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: AGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|37848274|gb|BJ606282.1|BJ606282
genomic: AGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162242229|gb|FC415842.1|FC415842
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: AGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162196025|gb|FC372703.1|FC372703
genomic: AGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|18337956|gb|BJ169980.1|BJ169980
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|208385867|gb|DC956705.1|DC956705
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|37844500|gb|BJ602508.1|BJ602508
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162196024|gb|FC372702.1|FC372702
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATEST: gi|162161758|gb|FC337899.1|FC337899
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
EST: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAG GTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
genomic: GAGCTAAATGAAGAGGAAGTGCTTCTAAGACTCGCCAATCTTTTTGAGgtctgtatca ... catctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAAT
ttgccccattgaggccagtgtcttccatgtggaataattggttgtcatctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATCTTTTCCCCAACCATAAG
aataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagggcattgtaagactttgaagtgttacttcagcaacttattctttgccccattgaggccagtgtcttccatgtggaataattggttgtcatctgacagGTTGATGAGAGCACGAGACTGTCAAGAACCTCTACGGTCGATCTGTTAAATCTTTTCCCCAACCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC