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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctcaatttgacgtattttaggtgtatggacttggttgagctagtactctttttagctggctgctttgtagtcttcttgactgtgattgtttgttacagCAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAGACCCTAGCATCGATTAAAGCGCGAATTCAAAACAAATTACAAATTCCTG

Basic information

species Physcomitrella patens
transcript PP1S104_2V6.1
intron # 27
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191827|gb|FC367976.1|FC367976
EST:     ATTTCCTCCGTGATGCCGCTCAAAATCAGATG                         CAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG
genomic: ATTTCCTCCGTGATGCCGCTCAAAATCAGATGgtacatagaa ... tttgttacagCAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG
EST: gi|162167819|gb|FC344549.1|FC344549
EST:     GTGTGATTCATGTTTATCATTTCCTCCGTGATGCCGCTCAAAATCAGATG                         CAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG
genomic: GTGTGATTCATGTTTATCATTTCCTCCGTGATGCCGCTCAAAATCAGATGgtacatagaa ... tttgttacagCAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG
EST: gi|162276115|gb|FC452807.1|FC452807
EST:     GTGTGATTCATGTTTATCATTTCCTCCGTGATGCCGCTCAAAATCAGATG                         CAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG
genomic: GTGTGATTCATGTTTATCATTTCCTCCGTGATGCCGCTCAAAATCAGATGgtacatagaa ... tttgttacagCAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctttttagctggctgctttgtagtcttcttgactgtgattgtttgttacagCAAGTTGAAAATTTCGGTGAACCCTTCTTTCTGAAAGTGAAGGAGAGTGAGACCCTAGCATCGATTAAAGCGCGAATTCAAAACAAATTACAAATTCCTG
                              tcttgac  putative branch site (score: 3)
     ttttta  TA-rich tract