1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
gtatattatattatgctcatctagctgcgtatttgtctcgtgaacatcattggaattttcggcagaaaattcaatctaagcttgatacagaggattgtacaacatgtcaatcttaaagcattttttttcccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG
species | Physcomitrella patens |
transcript | PP1S129_147V6.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTTACAACTGTCCTTCTCCGTGCTGGAG GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTNTGAAAGTTEST: gi|162177883|gb|FC355133.1|FC355133
genomic: TGCCTTTACAACTGTCCTTCTCCGTGCTGGAGgtatattata ... ccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
EST: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAG GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTEST: gi|162243942|gb|FC424286.1|FC424286
genomic: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAGgtatattata ... ccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
EST: CCGTGCTGGAG GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTEST: gi|162197288|gb|FC372250.1|FC372250
genomic: CCGTGCTGGAGgtatattata ... ccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
EST: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAG GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTEST: gi|208385867|gb|DC956705.1|DC956705
genomic: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAGgtatattata ... ccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
EST: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAG GATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
genomic: AGGGCCAACAAATCTTAATGCCTTTACAACTGTCCTTCTCCGTGCTGGAGgtatattata ... ccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTT
atacagaggattgtacaacatgtcaatcttaaagcattttttttcccgtgagcagGATGGCAACACAGAGCCTCTTCGCACGCCAAGATTCTCAGCTTTGAAAGTTGGCTACGAACTACCTCTTAATATTGCCGTCATGACTCTTCAG
gcttgat putative branch site (score: 9)
cattttttttcccgt putative PPT
ttaaagcatttttttt TA-rich tract