1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtacgttccctcagtactgcatctgattaatttcattgcatggttgtgtctggaatgaatttctgacctgcatctttgatggacattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAACCCGGATTATGAGGATGATCATTTGAGTTAAATTTGTAGAAATTGACGT
species | Physcomitrella patens |
transcript | PP1S414_22V6.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162181393|gb|FC358449.1|FC358449
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37846088|gb|BJ604096.1|BJ604096
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162275984|gb|FC452052.1|FC452052
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162255375|gb|FC432101.1|FC432101
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162192599|gb|FC370646.1|FC370646
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37828992|gb|BJ587004.1|BJ587004
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162196103|gb|FC372742.1|FC372742
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162172803|gb|FC348392.1|FC348392
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162192598|gb|FC370645.1|FC370645
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162154532|gb|FC330742.1|FC330742
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|19790154|gb|BQ041724.1|BQ041724
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37827917|gb|BJ585929.1|BJ585929
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162175300|gb|FC351498.1|FC351498
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37832308|gb|BJ590320.1|BJ590320
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|162198495|gb|FC375330.1|FC375330
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37848660|gb|BJ606668.1|BJ606668
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|15327138|gb|BI487641.1|BI487641
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAAEST: gi|37824938|gb|BJ583004.1|BJ583004
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
EST: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAA GTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
genomic: ACTCCTGTTATTTTGGCTACTGGTGACCGTGCAGAGCTGGCCACTGACAAgtacgttccc ... cattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAA
catggttgtgtctggaatgaatttctgacctgcatctttgatggacattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAACCCGGATTATGAGGATGATCATTTGAGTTAAATTTGTAGAAATTGACGT
aatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttccctcagtactgcatctgattaatttcattgcatggttgtgtctggaatgaatttctgacctgcatctttgatggacattttgcagGTACCTTCCTTTGTCATCGGTGTTAGAAGGATTTGTTATTTTGAAGCTCAACCCGGATTATGAGGATGATCATTTGAGTTAAATTTGTAGAAATTGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG