1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...acgaagctacaaaataatttgcttatggcgcagattgttgaaagttgtacatgtatttctgcaagtagtctaatccaaacttatggtggatggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAATCCTGATTATCAGCATGACCATTTGAGTAGTTAGATTTGTAGAAAGGGA
species | Physcomitrella patens |
transcript | PP1S3_553V6.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37835828|gb|BJ593840.1|BJ593840
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37848700|gb|BJ606708.1|BJ606708
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|18336901|gb|BJ168924.1|BJ168924
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|162176009|gb|FC351023.1|FC351023
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37830143|gb|BJ588155.1|BJ588155
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37846451|gb|BJ604459.1|BJ604459
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|67578805|gb|BJ950972.1|BJ950972
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37827765|gb|BJ585777.1|BJ585777
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|162163326|gb|FC339652.1|FC339652
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|18337499|gb|BJ169523.1|BJ169523
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37839139|gb|BJ597147.1|BJ597147
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37824468|gb|BJ582534.1|BJ582534
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|37826418|gb|BJ584430.1|BJ584430
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTANTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAAEST: gi|67507537|gb|BJ940419.1|BJ940419
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTANAAGGATTCGTGATTTTGAAGCTCAAEST: gi|162186176|gb|FC362108.1|FC362108
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
EST: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAA GTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
genomic: ACTCCAGTAATTTTGGCTACTGGTGACCGTGCCGAGCTGGCTACTGAGAAgtaagtctct ... tggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAA
tgtacatgtatttctgcaagtagtctaatccaaacttatggtggatggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAATCCTGATTATCAGCATGACCATTTGAGTAGTTAGATTTGTAGAAAGGGA
gtctaat putative branch site (score: 22)
atgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgaagctacaaaataatttgcttatggcgcagattgttgaaagttgtacatgtatttctgcaagtagtctaatccaaacttatggtggatggtgcgcagGTATATTCCCTTGTCAACTGTGTTAGAAGGATTCGTGATTTTGAAGCTCAATCCTGATTATCAGCATGACCATTTGAGTAGTTAGATTTGTAGAAAGGGA
- - - - - - - - - - - - - - - - - -tgttgaa