1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ggactcgcagttccgaaattctcttagctgtgtaagatttgtcacaggcttctacctggttcattttttcagagaatacttcattgttttttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCTCAATAGAAAATGGATTGCTTACACCCACGCTCAAG
species | Physcomitrella patens |
transcript | PP1S408_23V6.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|67579410|gb|BJ951531.1|BJ951531
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|67578962|gb|BJ951113.1|BJ951113
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|162171191|gb|FC346362.1|FC346362
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|162269122|gb|FC444990.1|FC444990
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|19778765|gb|BQ039356.1|BQ039356
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|37848450|gb|BJ606458.1|BJ606458
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|162205653|gb|FC381881.1|FC381881
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCEST: gi|162163688|gb|FC340287.1|FC340287
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
EST: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAG TTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
genomic: TACGAGTGGCTGTGCTTGCGGATATGAATACTGTCGGTCGCGAAGCACAGgtttggtttt ... ttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTC
aggcttctacctggttcattttttcagagaatacttcattgttttttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCTCAATAGAAAATGGATTGCTTACACCCACGCTCAAG
cttcattgttttttct CT-rich tract
attgttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggactcgcagttccgaaattctcttagctgtgtaagatttgtcacaggcttctacctggttcattttttcagagaatacttcattgttttttctttgcagTTGCGAGGTTTTGAGTTTGCCAAAGCTGTGACGTTGATTCCTGAACCATTCTCAATAGAAAATGGATTGCTTACACCCACGCTCAAG
- - - - - - - - - - - - - - - - - - - - - cacaggc