1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ttccttgtactttacaatatactttttaagtagttgcaattctttttctagtagtatgtagtcttcagcagttaccacaatctcactttctgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGTACGTGGAAGCGGACCAACACGATGTTGTAGATGTCGACGACGAAGTTG
species | Physcomitrella patens |
transcript | PP1S243_63V6.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|37851439|gb|BJ609447.1|BJ609447
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162157188|gb|FC332822.1|FC332822
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162168671|gb|FC343933.1|FC343933
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162239260|gb|FC416516.1|FC416516
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162239261|gb|FC416517.1|FC416517
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162149693|gb|FC326744.1|FC326744
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|37839801|gb|BJ597809.1|BJ597809
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162174016|gb|FC350531.1|FC350531
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162248786|gb|FC422013.1|FC422013
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGEST: gi|162149694|gb|FC326745.1|FC326745
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
EST: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAA AATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
genomic: TGGATGTGAATGAGGGTCCCCATCTGGAGAACGGTGGCTTTGTACATGAAgtgagcacct ... tgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAG
ttctagtagtatgtagtcttcagcagttaccacaatctcactttctgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGTACGTGGAAGCGGACCAACACGATGTTGTAGATGTCGACGACGAAGTTG
atctcac putative branch site (score: 8)
tctcactttctgtc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccttgtactttacaatatactttttaagtagttgcaattctttttctagtagtatgtagtcttcagcagttaccacaatctcactttctgtcgtacagAATGGAGAACTTGTGGAGGATCAAGAACTGGAGTCCTACCAGGACGGCGAGTACGTGGAAGCGGACCAACACGATGTTGTAGATGTCGACGACGAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG