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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttcttgttgtttcatgtgtgtgcgactatgaggagtattttctaatatttaccgtagttattagttaccattgtgttcacagaatttggttggacaaccaatcggtcttactgcaaacttctggctgtgtgtttcgaagatgatgctaaattgacttgtaatcaatgttcattttacagGGAGCTGGGAGAAAAATCTCTTCTGGATGCTAACAGAGATTTCCTGGATGCTCATTCCG

Basic information

species Physcomitrella patens
transcript PP1S67_222V6.2
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334624|gb|BJ166641.1|BJ166641
EST:     GCTGAGAAGATTATTCATGACGTTATTGCATTGGAGAGAGGGTCACTGAA                         GGAGCTGGGAGAAAAATCTCTTCTGGATGCTAACAGAGATTTCCTGGATGC
genomic: GCTGAGAAGATTATTCATGACGTTATTGCATTGGAGAGAGGGTCACTGAAgtaagctttc ... cattttacagGGAGCTGGGAGAAAAATCTCTTCTGGATGCTAACAGAGATTTCCTGGATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtgtttcgaagatgatgctaaattgacttgtaatcaatgttcattttacagGGAGCTGGGAGAAAAATCTCTTCTGGATGCTAACAGAGATTTCCTGGATGCTCATTCCG
                                           ttcatttt  CT-rich tract
                                           ttcatttta  TA-rich tract