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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcagtgccacaatcaatttagaggtgatggcaaggcgttgttctcaatttgtttgtgcaaatggccagtgctttacaacgtgatacagagtcctggtattttgttttatatttgggagtcttttatgtatggcttttcattctgacgttttcctatgaattgtgaccagGATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCTGGAGTCACTCCTTACATTCGTCCCTTGACCATGGCTGACATGCGTCAGG

Basic information

species Physcomitrella patens
transcript PP1S3_184V6.1
intron # 22
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150048|gb|FC326579.1|FC326579
EST:     CAACTGCTGCATACAGGAGGATACGGGAATTACTAGATCAAGAAAAGAAG                         GATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT
genomic: CAACTGCTGCATACAGGAGGATACGGGAATTACTAGATCAAGAAAAGAAGgtgagttctt ... ttgtgaccagGATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT
EST: gi|162227222|gb|FC403866.1|FC403866
EST:     CAACTGCTGCATACAGGAGGATACGGGAATTACTAGATCAAGAAAAGAAG                         GATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT
genomic: CAACTGCTGCATACAGGAGGATACGGGAATTACTAGATCAAGAAAAGAAGgtgagttctt ... ttgtgaccagGATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT
EST: gi|162219049|gb|FC394944.1|FC394944
EST:     GAATTACTAGATCAAGAAAAGAAG                         GATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT
genomic: GAATTACTAGATCAAGAAAAGAAGgtgagttctt ... ttgtgaccagGATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtcttttatgtatggcttttcattctgacgttttcctatgaattgtgaccagGATAAAGAGAGAGCCAAGGCAACAGGCGTTGATCCTCCTCAAGTTGAAGCTGGAGTCACTCCTTACATTCGTCCCTTGACCATGGCTGACATGCGTCAGG
                         ttctgac  putative branch site (score: 2)
      ttttatgtat  TA-rich tract