1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaaattaaattcatggtattgacaaattttaagagaagtaaaagaaacggatggaaaataacttgctttttttaaaaaacttgtgacaagcagttgctgaccgtggggttgtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAATTACCATTCGTCACACTTTGGCTGGATTGTCTGCAGAAGCTTCAAAGT
species | Physcomitrella patens |
transcript | PP1S15_37V6.1 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATG CGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAEST: gi|162279470|gb|FC455586.1|FC455586
genomic: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATGgtaaattaaa ... gtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
EST: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATG CGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAEST: gi|162257032|gb|FC432771.1|FC432771
genomic: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATGgtaaattaaa ... gtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
EST: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATG CGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAEST: gi|19784543|gb|BQ040195.1|BQ040195
genomic: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATGgtaaattaaa ... gtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
EST: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATG CGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAEST: gi|162203140|gb|FC378535.1|FC378535
genomic: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATGgtaaattaaa ... gtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
EST: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATG CGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
genomic: AGGCAATCGTACAGTGATGAAGATTGACGTGCTGCTCTCTGAAAAGAATGgtaaattaaa ... gtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCA
ctttttttaaaaaacttgtgacaagcagttgctgaccgtggggttgtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAATTACCATTCGTCACACTTTGGCTGGATTGTCTGCAGAAGCTTCAAAGT
tgctgac putative branch site (score: 6)
tttaaaaaacttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaattcatggtattgacaaattttaagagaagtaaaagaaacggatggaaaataacttgctttttttaaaaaacttgtgacaagcagttgctgaccgtggggttgtttgagcagCGGACAAATGGAAGCTATCGGACATGGGAACCAATCATTGAATGAAGTCCAATTACCATTCGTCACACTTTGGCTGGATTGTCTGCAGAAGCTTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC