1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ttctcaaccggaaaggttggcactttttatagacatgcaatgttttattaccctgacaagaatatgactgcggacgtttattttttgttggtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAGTGCTTGCGGACATGGATGCTGCTGGTCGTGAAGCACAG
species | Physcomitrella patens |
transcript | PP1S12_178V6.2 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|37847723|gb|BJ605731.1|BJ605731
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|162231381|gb|FC406804.1|FC406804
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|162272001|gb|FC448419.1|FC448419
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|162272000|gb|FC448418.1|FC448418
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|162159914|gb|FC336167.1|FC336167
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|37846424|gb|BJ604432.1|BJ604432
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAEST: gi|162192790|gb|FC369628.1|FC369628
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
EST: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAG CATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
genomic: TTATTGATCCAGACACTCTACCTGCCTGGGCTAAATCAAGGGGTATTAAGgtaagtattc ... gtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCA
tattaccctgacaagaatatgactgcggacgtttattttttgttggtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAGTGCTTGCGGACATGGATGCTGCTGGTCGTGAAGCACAG
ccctgac putative branch site (score: 10)
tttattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcaaccggaaaggttggcactttttatagacatgcaatgttttattaccctgacaagaatatgactgcggacgtttattttttgttggtggaagcagCATGCTGACAATTTGAAAGAGCTATGCGCTGATCCAGTCATACGAGCTGCAGTGCTTGCGGACATGGATGCTGCTGGTCGTGAAGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - -gacatgc