1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
...gctttgggtgttatctatatttattggcccttcacgattccccttcgttgaattggacttaactatctgtcatcgtttggtttctatttgtgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCCTCAGTTTGTGCTCTAAATTTGTTAATGAGCATGGAGAAGTTCAAACGA
species | Physcomitrella patens |
transcript | PP1S8_288V6.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCEST: gi|162180511|gb|FC356153.1|FC356153
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCEST: gi|162181321|gb|FC358416.1|FC358416
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCEST: gi|162256239|gb|FC432295.1|FC432295
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
EST: TGTGGAGACTTTCAATTCCACCNNNNNNNCGTGCTGGAGTGGTTTTTAAA AATGATCAAAGTGTCGTEST: gi|162205305|gb|FC380987.1|FC380987
genomic: TGTGGAGACTTTCAATTCCACCAAAAAA-CGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGT
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCEST: gi|162181733|gb|FC358763.1|FC358763
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCEST: gi|162256677|gb|FC433195.1|FC433195
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
EST: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAG AATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
genomic: ATGTGGAGACTTTCAATTCCACCAAAAAACGTGCTGGAGTGGTTTTTAAGgttcggctcg ... tgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATC
cgttgaattggacttaactatctgtcatcgtttggtttctatttgtgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCCTCAGTTTGTGCTCTAAATTTGTTAATGAGCATGGAGAAGTTCAAACGA
acttaac putative branch site (score: 25)
tttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgggtgttatctatatttattggcccttcacgattccccttcgttgaattggacttaactatctgtcatcgtttggtttctatttgtgttcgacagAATGATCAAGGTGTCGTGGAAGCTCACTGGAAGGGGGCTGCCGAGATTATCCTCAGTTTGTGCTCTAAATTTGTTAATGAGCATGGAGAAGTTCAAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT